Analysis of interatomic Contacts of Structural Units in PDB entry:
8U7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U7D entry

There are 2 chains in PDB entry 8U7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 74ALA 1192
B
 ALA 74ALA 1192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 8U7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 95Right-handed alpha
Helix 2
AA2
A
102 120Right-handed alpha
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
A
134 141Right-handed alpha
Helix 5
AA5
A
141 154Right-handed alpha
Helix 6
AA6
A
155 162Right-handed alpha
Helix 7
AA7
A
162 189Right-handed alpha
Helix 8
AA8
A
194 205Right-handed alpha
Helix 9
AA9
A
209 221Right-handed alpha
Helix 10
AB1
A
223 254Right-handed alpha
Helix 11
AB2
A
260 291Right-handed alpha
Helix 12
AB3
A
296 317Right-handed alpha
Helix 13
AB4
A
319 322Right-handed 310
Helix 14
AB5
A
323 337Right-handed alpha
Helix 15
AB6
A
342 375Right-handed alpha
Helix 16
AB7
A
381 414Right-handed alpha
Helix 17
AB8
A
418 428Right-handed alpha
Helix 18
AB9
A
432 447Right-handed alpha
Helix 19
AC1
A
449 482Right-handed alpha
Helix 20
AC2
A
487 513Right-handed alpha
Helix 21
AC3
A
522 529Right-handed alpha
Helix 22
AC4
A
571 600Right-handed alpha
Helix 23
AC5
A
604 621Right-handed alpha
Helix 24
AC6
A
627 632Right-handed alpha
Helix 25
AC7
A
633 635Right-handed 310
Helix 26
AC8
A
640 652Right-handed alpha
Helix 27
AC9
A
762 771Right-handed alpha
Helix 28
AD1
A
807 810Right-handed 310
Helix 29
AD2
A
811 851Right-handed alpha
Helix 30
AD3
A
853 858Right-handed alpha
Helix 31
AD4
A
860 889Right-handed alpha
Helix 32
AD5
A
889 919Right-handed alpha
Helix 33
AD6
A
923 942Right-handed alpha
Helix 34
AD7
A
952 959Right-handed alpha
Helix 35
AD8
A
966 976Right-handed alpha
Helix 36
AD9
A
1043 1050Right-handed alpha
Helix 37
AE1
A
1070 1080Right-handed alpha
Helix 38
AE2
A
1085 1107Right-handed alpha
Helix 39
AE3
A
1113 1124Right-handed alpha
Helix 40
AE4
A
1155 1158Right-handed 310
Helix 41
AE5
B
77 95Right-handed alpha
Helix 42
AE6
B
102 120Right-handed alpha
Helix 43
AE7
B
120 132Right-handed alpha
Helix 44
AE8
B
134 141Right-handed alpha
Helix 45
AE9
B
141 154Right-handed alpha
Helix 46
AF1
B
155 161Right-handed alpha
Helix 47
AF2
B
162 189Right-handed alpha
Helix 48
AF3
B
197 205Right-handed alpha
Helix 49
AF4
B
209 220Right-handed alpha
Helix 50
AF5
B
223 254Right-handed alpha
Helix 51
AF6
B
260 291Right-handed alpha
Helix 52
AF7
B
296 317Right-handed alpha
Helix 53
AF8
B
319 322Right-handed 310
Helix 54
AF9
B
323 337Right-handed alpha
Helix 55
AG1
B
342 375Right-handed alpha
Helix 56
AG2
B
381 414Right-handed alpha
Helix 57
AG3
B
418 428Right-handed alpha
Helix 58
AG4
B
432 447Right-handed alpha
Helix 59
AG5
B
449 482Right-handed alpha
Helix 60
AG6
B
487 513Right-handed alpha
Helix 61
AG7
B
522 529Right-handed alpha
Helix 62
AG8
B
571 600Right-handed alpha
Helix 63
AG9
B
604 621Right-handed alpha
Helix 64
AH1
B
627 632Right-handed alpha
Helix 65
AH2
B
633 635Right-handed 310
Helix 66
AH3
B
640 652Right-handed alpha
Helix 67
AH4
B
762 771Right-handed alpha
Helix 68
AH5
B
807 810Right-handed 310
Helix 69
AH6
B
811 817Right-handed alpha
Helix 70
AH7
B
817 856Right-handed alpha
Helix 71
AH8
B
860 889Right-handed alpha
Helix 72
AH9
B
889 919Right-handed alpha
Helix 73
AI1
B
923 942Right-handed alpha
Helix 74
AI2
B
952 959Right-handed alpha
Helix 75
AI3
B
966 976Right-handed alpha
Helix 76
AI4
B
1043 1050Right-handed alpha
Helix 77
AI5
B
1070 1080Right-handed alpha
Helix 78
AI6
B
1085 1107Right-handed alpha
Helix 79
AI7
B
1113 1124Right-handed alpha
Helix 80
AI8
B
1155 1158Right-handed 310
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There are 9 sheets in PDB entry 8U7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 982first strand
Strand 2
A
1063 1069anti-parallel
Strand 3
A
997 1003anti-parallel
Strand 4
A
1041 1042anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1036first strand
Strand 2
A
1006 1010anti-parallel
Strand 3
A
1055 1059anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1127first strand
Strand 2
A
1185 1190anti-parallel
Strand 3
A
1142 1149anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1135 1136first strand
Strand 2
A
1174 1176anti-parallel
Strand 3
A
1151 1154anti-parallel
Strand 4
A
1159 1162anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
978 982first strand
Strand 2
B
1063 1069anti-parallel
Strand 3
B
997 998anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
978 982first strand
Strand 2
B
1063 1069anti-parallel
Strand 3
B
1001 1003anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1032 1036first strand
Strand 2
B
1006 1010anti-parallel
Strand 3
B
1055 1059anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1125 1127first strand
Strand 2
B
1185 1190anti-parallel
Strand 3
B
1142 1149anti-parallel
Strand 4
B
1165 1166anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1135 1136first strand
Strand 2
B
1174 1176anti-parallel
Strand 3
B
1151 1154anti-parallel
Strand 4
B
1159 1162anti-parallel
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