Analysis of interatomic Contacts of Structural Units in PDB entry:
8U7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U7F entry

There are 2 chains in PDB entry 8U7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 484
B
 MET 1PHE 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8U7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
28 36Right-handed alpha
Helix 3
AA3
A
36 42Right-handed alpha
Helix 4
AA4
A
49 53Right-handed 310
Helix 5
AA5
A
55 70Right-handed alpha
Helix 6
AA6
A
80 85Right-handed alpha
Helix 7
AA7
A
109 120Right-handed alpha
Helix 8
AA8
A
121 137Right-handed alpha
Helix 9
AA9
A
174 193Right-handed alpha
Helix 10
AB1
A
204 212Right-handed alpha
Helix 11
AB2
A
217 241Right-handed alpha
Helix 12
AB3
A
260 262Right-handed 310
Helix 13
AB4
A
263 275Right-handed alpha
Helix 14
AB5
A
275 283Right-handed alpha
Helix 15
AB6
A
287 298Right-handed alpha
Helix 16
AB7
A
339 343Right-handed 310
Helix 17
AB8
A
366 381Right-handed alpha
Helix 18
AB9
A
398 416Right-handed alpha
Helix 19
AC1
A
433 440Right-handed 310
Helix 20
AC2
A
457 470Right-handed alpha
Helix 21
AC3
A
473 481Right-handed 310
Helix 22
AC4
B
13 18Right-handed alpha
Helix 23
AC5
B
28 36Right-handed alpha
Helix 24
AC6
B
36 42Right-handed alpha
Helix 25
AC7
B
49 53Right-handed 310
Helix 26
AC8
B
55 70Right-handed alpha
Helix 27
AC9
B
80 85Right-handed alpha
Helix 28
AD1
B
109 117Right-handed alpha
Helix 29
AD2
B
121 137Right-handed alpha
Helix 30
AD3
B
174 193Right-handed alpha
Helix 31
AD4
B
204 209Right-handed alpha
Helix 32
AD5
B
217 240Right-handed alpha
Helix 33
AD6
B
260 262Right-handed 310
Helix 34
AD7
B
263 275Right-handed alpha
Helix 35
AD8
B
275 285Right-handed alpha
Helix 36
AD9
B
287 298Right-handed alpha
Helix 37
AE1
B
339 346Right-handed 310
Helix 38
AE2
B
366 381Right-handed alpha
Helix 39
AE3
B
398 416Right-handed alpha
Helix 40
AE4
B
433 440Right-handed 310
Helix 41
AE5
B
457 470Right-handed alpha
Helix 42
AE6
B
473 481Right-handed 310
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There are 6 sheets in PDB entry 8U7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
316 328anti-parallel
Strand 3
A
384 388parallel
Strand 4
A
420 425parallel
Strand 5
A
7 11parallel
Strand 6
A
74 78parallel
Strand 7
A
141 147parallel
Strand 8
A
198 203parallel
Strand 9
A
246 258parallel
Strand 10
A
316 328parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
103 107anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 448first strand
Strand 2
A
453 456anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
315 328anti-parallel
Strand 3
B
384 388parallel
Strand 4
B
420 425parallel
Strand 5
B
7 11parallel
Strand 6
B
74 78parallel
Strand 7
B
141 145parallel
Strand 8
B
198 203parallel
Strand 9
B
246 258parallel
Strand 10
B
315 328parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
103 106anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 448first strand
Strand 2
B
453 456anti-parallel
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