Analysis of interatomic Contacts of Structural Units in PDB entry:
8U7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U7Y entry

There are 2 chains in PDB entry 8U7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 9PHE 719
B
 TRP 9PHE 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8U7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
27 34Right-handed alpha
Helix 3
AA3
A
42 51Right-handed alpha
Helix 4
AA4
A
60 69Right-handed alpha
Helix 5
AA5
A
76 88Right-handed alpha
Helix 6
AA6
A
97 109Right-handed alpha
Helix 7
AA7
A
117 133Right-handed alpha
Helix 8
AA8
A
140 151Right-handed alpha
Helix 9
AA9
A
183 191Right-handed alpha
Helix 10
AB1
A
195 214Right-handed alpha
Helix 11
AB2
A
220 242Right-handed alpha
Helix 12
AB3
A
245 252Right-handed alpha
Helix 13
AB4
A
253 259Right-handed alpha
Helix 14
AB5
A
263 294Right-handed alpha
Helix 15
AB6
A
320 338Right-handed alpha
Helix 16
AB7
A
340 346Right-handed alpha
Helix 17
AB8
A
348 356Right-handed alpha
Helix 18
AB9
A
358 368Right-handed alpha
Helix 19
AC1
A
372 390Right-handed alpha
Helix 20
AC2
A
467 478Right-handed alpha
Helix 21
AC3
A
529 534Right-handed alpha
Helix 22
AC4
A
547 564Right-handed alpha
Helix 23
AC5
A
600 616Right-handed alpha
Helix 24
AC6
A
644 655Right-handed alpha
Helix 25
AC7
A
670 680Right-handed alpha
Helix 26
AC8
A
696 709Right-handed alpha
Helix 27
AC9
B
10 20Right-handed alpha
Helix 28
AD1
B
27 34Right-handed alpha
Helix 29
AD2
B
42 51Right-handed alpha
Helix 30
AD3
B
60 69Right-handed alpha
Helix 31
AD4
B
76 88Right-handed alpha
Helix 32
AD5
B
97 109Right-handed alpha
Helix 33
AD6
B
117 133Right-handed alpha
Helix 34
AD7
B
140 151Right-handed alpha
Helix 35
AD8
B
183 191Right-handed alpha
Helix 36
AD9
B
195 214Right-handed alpha
Helix 37
AE1
B
220 242Right-handed alpha
Helix 38
AE2
B
245 252Right-handed alpha
Helix 39
AE3
B
253 259Right-handed alpha
Helix 40
AE4
B
263 294Right-handed alpha
Helix 41
AE5
B
320 338Right-handed alpha
Helix 42
AE6
B
340 346Right-handed alpha
Helix 43
AE7
B
348 356Right-handed alpha
Helix 44
AE8
B
358 368Right-handed alpha
Helix 45
AE9
B
372 390Right-handed alpha
Helix 46
AF1
B
467 478Right-handed alpha
Helix 47
AF2
B
529 534Right-handed alpha
Helix 48
AF3
B
547 564Right-handed alpha
Helix 49
AF4
B
600 616Right-handed alpha
Helix 50
AF5
B
644 655Right-handed alpha
Helix 51
AF6
B
670 680Right-handed alpha
Helix 52
AF7
B
696 709Right-handed alpha
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There are 8 sheets in PDB entry 8U7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 463first strand
Strand 2
A
412 418anti-parallel
Strand 3
A
399 408anti-parallel
Strand 4
A
518 520anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 433first strand
Strand 2
A
444 447anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 629first strand
Strand 2
A
588 593parallel
Strand 3
A
538 542parallel
Strand 4
A
690 692parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 567first strand
Strand 2
A
574 576anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 463first strand
Strand 2
B
412 418anti-parallel
Strand 3
B
399 408anti-parallel
Strand 4
B
518 520anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 433first strand
Strand 2
B
444 447anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
624 629first strand
Strand 2
B
588 593parallel
Strand 3
B
538 542parallel
Strand 4
B
690 693parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
565 567first strand
Strand 2
B
574 576anti-parallel
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