Analysis of interatomic Contacts of Structural Units in PDB entry:
8U85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U85 entry

There are 4 chains in PDB entry 8U85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4PHE 719
B
 ALA 6ALA 18
C
 GLU 4PHE 719
D
 ALA 6ALA 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8U85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
28 36Right-handed alpha
Helix 3
AA3
A
41 52Right-handed alpha
Helix 4
AA4
A
61 73Right-handed alpha
Helix 5
AA5
A
76 88Right-handed alpha
Helix 6
AA6
A
97 107Right-handed alpha
Helix 7
AA7
A
116 132Right-handed alpha
Helix 8
AA8
A
140 151Right-handed alpha
Helix 9
AA9
A
153 158Right-handed alpha
Helix 10
AB1
A
182 214Right-handed alpha
Helix 11
AB2
A
220 241Right-handed alpha
Helix 12
AB3
A
246 251Right-handed alpha
Helix 13
AB4
A
254 259Right-handed alpha
Helix 14
AB5
A
263 295Right-handed alpha
Helix 15
AB6
A
322 338Right-handed alpha
Helix 16
AB7
A
340 346Right-handed alpha
Helix 17
AB8
A
350 357Right-handed alpha
Helix 18
AB9
A
358 368Right-handed alpha
Helix 19
AC1
A
372 391Right-handed alpha
Helix 20
AC2
A
466 479Right-handed alpha
Helix 21
AC3
A
529 534Right-handed alpha
Helix 22
AC4
A
547 564Right-handed alpha
Helix 23
AC5
A
600 614Right-handed alpha
Helix 24
AC6
A
639 650Right-handed alpha
Helix 25
AC7
A
656 659Right-handed 310
Helix 26
AC8
A
660 665Right-handed alpha
Helix 27
AC9
A
673 684Right-handed alpha
Helix 28
AD1
A
696 711Right-handed alpha
Helix 29
AD2
B
7 18Right-handed alpha
Helix 30
AD3
C
5 18Right-handed alpha
Helix 31
AD4
C
28 36Right-handed alpha
Helix 32
AD5
C
41 52Right-handed alpha
Helix 33
AD6
C
61 73Right-handed alpha
Helix 34
AD7
C
76 88Right-handed alpha
Helix 35
AD8
C
97 107Right-handed alpha
Helix 36
AD9
C
116 132Right-handed alpha
Helix 37
AE1
C
140 151Right-handed alpha
Helix 38
AE2
C
153 158Right-handed alpha
Helix 39
AE3
C
182 214Right-handed alpha
Helix 40
AE4
C
220 241Right-handed alpha
Helix 41
AE5
C
246 251Right-handed alpha
Helix 42
AE6
C
254 259Right-handed alpha
Helix 43
AE7
C
263 295Right-handed alpha
Helix 44
AE8
C
322 338Right-handed alpha
Helix 45
AE9
C
340 346Right-handed alpha
Helix 46
AF1
C
350 357Right-handed alpha
Helix 47
AF2
C
358 368Right-handed alpha
Helix 48
AF3
C
372 391Right-handed alpha
Helix 49
AF4
C
466 479Right-handed alpha
Helix 50
AF5
C
529 534Right-handed alpha
Helix 51
AF6
C
547 564Right-handed alpha
Helix 52
AF7
C
600 614Right-handed alpha
Helix 53
AF8
C
639 650Right-handed alpha
Helix 54
AF9
C
656 659Right-handed 310
Helix 55
AG1
C
660 665Right-handed alpha
Helix 56
AG2
C
673 684Right-handed alpha
Helix 57
AG3
C
696 711Right-handed alpha
Helix 58
AG4
D
7 18Right-handed alpha
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There are 8 sheets in PDB entry 8U85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
521 525anti-parallel
Strand 3
A
430 433anti-parallel
Strand 4
A
444 447anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 408first strand
Strand 2
A
412 418anti-parallel
Strand 3
A
457 463anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 668first strand
Strand 2
A
624 629parallel
Strand 3
A
588 593parallel
Strand 4
A
538 543parallel
Strand 5
A
690 694parallel
Strand 6
A
715 716parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 566first strand
Strand 2
A
575 576anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
397 398first strand
Strand 2
C
521 525anti-parallel
Strand 3
C
430 433anti-parallel
Strand 4
C
444 447anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
402 408first strand
Strand 2
C
412 418anti-parallel
Strand 3
C
457 463anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
667 668first strand
Strand 2
C
624 629parallel
Strand 3
C
588 593parallel
Strand 4
C
538 543parallel
Strand 5
C
690 694parallel
Strand 6
C
715 716parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
565 566first strand
Strand 2
C
575 576anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il