Analysis of interatomic Contacts of Structural Units in PDB entry:
8U87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U87 entry

There are 2 chains in PDB entry 8U87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 9PHE 719
C
 THR 182PHE 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8U87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 19Right-handed alpha
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
60 72Right-handed alpha
Helix 5
AA5
A
75 88Right-handed alpha
Helix 6
AA6
A
97 112Right-handed alpha
Helix 7
AA7
A
116 132Right-handed alpha
Helix 8
AA8
A
140 149Right-handed alpha
Helix 9
AA9
A
153 158Right-handed alpha
Helix 10
AB1
A
160 166Right-handed 310
Helix 11
AB2
A
183 187Right-handed alpha
Helix 12
AB3
A
191 214Right-handed alpha
Helix 13
AB4
A
220 241Right-handed alpha
Helix 14
AB5
A
245 253Right-handed alpha
Helix 15
AB6
A
254 259Right-handed alpha
Helix 16
AB7
A
263 294Right-handed alpha
Helix 17
AB8
A
320 338Right-handed alpha
Helix 18
AB9
A
341 346Right-handed alpha
Helix 19
AC1
A
348 356Right-handed alpha
Helix 20
AC2
A
358 368Right-handed alpha
Helix 21
AC3
A
372 391Right-handed alpha
Helix 22
AC4
A
467 478Right-handed alpha
Helix 23
AC5
A
529 534Right-handed alpha
Helix 24
AC6
A
547 563Right-handed alpha
Helix 25
AC7
A
600 616Right-handed alpha
Helix 26
AC8
A
638 656Right-handed alpha
Helix 27
AC9
A
673 684Right-handed alpha
Helix 28
AD1
A
696 711Right-handed alpha
Helix 29
AD2
C
183 189Right-handed alpha
Helix 30
AD3
C
189 213Right-handed alpha
Helix 31
AD4
C
220 242Right-handed alpha
Helix 32
AD5
C
244 253Right-handed alpha
Helix 33
AD6
C
254 259Right-handed alpha
Helix 34
AD7
C
263 293Right-handed alpha
Helix 35
AD8
C
320 338Right-handed alpha
Helix 36
AD9
C
340 346Right-handed alpha
Helix 37
AE1
C
349 356Right-handed alpha
Helix 38
AE2
C
358 368Right-handed alpha
Helix 39
AE3
C
372 391Right-handed alpha
Helix 40
AE4
C
409 411Right-handed 310
Helix 41
AE5
C
467 477Right-handed alpha
Helix 42
AE6
C
529 534Right-handed alpha
Helix 43
AE7
C
547 563Right-handed alpha
Helix 44
AE8
C
600 614Right-handed alpha
Helix 45
AE9
C
615 620Right-handed 310
Helix 46
AF1
C
673 684Right-handed alpha
Helix 47
AF2
C
696 710Right-handed alpha
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There are 10 sheets in PDB entry 8U87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
58 59anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 463first strand
Strand 2
A
412 418anti-parallel
Strand 3
A
398 408anti-parallel
Strand 4
A
518 521anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 433first strand
Strand 2
A
444 447anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 630first strand
Strand 2
A
588 594parallel
Strand 3
A
538 543parallel
Strand 4
A
690 694parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 567first strand
Strand 2
A
574 576anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
397 398first strand
Strand 2
C
521 522anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
402 407first strand
Strand 2
C
413 418anti-parallel
Strand 3
C
457 462anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
430 433first strand
Strand 2
C
444 447anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
627 629first strand
Strand 2
C
588 593parallel
Strand 3
C
538 543parallel
Strand 4
C
690 694parallel
Strand 5
C
713 714parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
565 567first strand
Strand 2
C
574 576anti-parallel
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