Analysis of interatomic Contacts of Structural Units in PDB entry:
8U89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U89 entry

There are 3 chains in PDB entry 8U89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24ALA 589
B
 ALA 105ASN 477
C
 ASP 2LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 8U89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 34Right-handed alpha
Helix 2
AA2
A
34 42Right-handed alpha
Helix 3
AA3
A
45 50Right-handed alpha
Helix 4
AA4
A
50 58Right-handed alpha
Helix 5
AA5
A
62 73Right-handed alpha
Helix 6
AA6
A
76 81Right-handed alpha
Helix 7
AA7
A
82 88Right-handed 310
Helix 8
AA8
A
89 97Right-handed alpha
Helix 9
AA9
A
101 119Right-handed alpha
Helix 10
AB1
A
120 137Right-handed alpha
Helix 11
AB2
A
140 149Right-handed alpha
Helix 12
AB3
A
159 175Right-handed alpha
Helix 13
AB4
A
178 194Right-handed alpha
Helix 14
AB5
A
197 204Right-handed alpha
Helix 15
AB6
A
204 214Right-handed alpha
Helix 16
AB7
A
217 234Right-handed alpha
Helix 17
AB8
A
236 244Right-handed alpha
Helix 18
AB9
A
244 253Right-handed alpha
Helix 19
AC1
A
256 266Right-handed alpha
Helix 20
AC2
A
266 275Right-handed alpha
Helix 21
AC3
A
275 292Right-handed alpha
Helix 22
AC4
A
295 305Right-handed alpha
Helix 23
AC5
A
305 312Right-handed alpha
Helix 24
AC6
A
314 316Right-handed 310
Helix 25
AC7
A
317 335Right-handed alpha
Helix 26
AC8
A
338 347Right-handed alpha
Helix 27
AC9
A
348 351Right-handed 310
Helix 28
AD1
A
352 357Right-handed alpha
Helix 29
AD2
A
357 374Right-handed alpha
Helix 30
AD3
A
377 387Right-handed alpha
Helix 31
AD4
A
387 393Right-handed alpha
Helix 32
AD5
A
396 404Right-handed alpha
Helix 33
AD6
A
404 412Right-handed alpha
Helix 34
AD7
A
416 435Right-handed alpha
Helix 35
AD8
A
435 443Right-handed alpha
Helix 36
AD9
A
443 450Right-handed alpha
Helix 37
AE1
A
451 453Right-handed 310
Helix 38
AE2
A
455 474Right-handed alpha
Helix 39
AE3
A
474 482Right-handed alpha
Helix 40
AE4
A
482 488Right-handed alpha
Helix 41
AE5
A
489 492Right-handed 310
Helix 42
AE6
A
494 521Right-handed alpha
Helix 43
AE7
A
521 529Right-handed alpha
Helix 44
AE8
A
533 548Right-handed alpha
Helix 45
AE9
A
552 559Right-handed alpha
Helix 46
AF1
A
559 568Right-handed alpha
Helix 47
AF2
A
572 586Right-handed alpha
Helix 48
AF3
B
113 124Right-handed alpha
Helix 49
AF4
B
138 159Right-handed alpha
Helix 50
AF5
B
167 180Right-handed alpha
Helix 51
AF6
B
195 199Right-handed 310
Helix 52
AF7
B
206 223Right-handed alpha
Helix 53
AF8
B
227 232Right-handed alpha
Helix 54
AF9
B
236 246Right-handed alpha
Helix 55
AG1
B
247 249Right-handed 310
Helix 56
AG2
B
251 269Right-handed alpha
Helix 57
AG3
B
272 290Right-handed alpha
Helix 58
AG4
B
296 309Right-handed alpha
Helix 59
AG5
B
316 326Right-handed alpha
Helix 60
AG6
B
328 333Right-handed 310
Helix 61
AG7
B
335 354Right-handed alpha
Helix 62
AG8
B
357 368Right-handed alpha
Helix 63
AG9
B
373 389Right-handed alpha
Helix 64
AH1
B
392 413Right-handed alpha
Helix 65
AH2
B
415 424Right-handed alpha
Helix 66
AH3
B
425 427Right-handed 310
Helix 67
AH4
B
428 438Right-handed alpha
Helix 68
AH5
B
438 453Right-handed alpha
Helix 69
AH6
B
459 477Right-handed alpha
Helix 70
AH7
C
3 18Right-handed alpha
Helix 71
AH8
C
24 40Right-handed alpha
Helix 72
AH9
C
61 73Right-handed alpha
Helix 73
AI1
C
92 107Right-handed alpha
Helix 74
AI2
C
120 127Right-handed alpha
Helix 75
AI3
C
129 138Right-handed alpha
Helix 76
AI4
C
140 151Right-handed alpha
Helix 77
AI5
C
176 182Right-handed alpha
Helix 78
AI6
C
193 201Right-handed alpha
Helix 79
AI7
C
221 233Right-handed alpha
Helix 80
AI8
C
264 268Right-handed 310
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There are 3 sheets in PDB entry 8U89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
248 251anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 113first strand
Strand 2
C
80 82parallel
Strand 3
C
52 55parallel
Strand 4
C
273 278anti-parallel
Strand 5
C
284 289anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
218 220parallel
Strand 3
C
210 211anti-parallel
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