Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U8B entry

There are 2 chains in PDB entry 8U8B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 558	GLU 2527
B	GLY 558	GLU 2527

There are125 helices in PDB entry 8U8B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	559	571	Right-handed alpha
Helix 2	AA2	A	585	596	Right-handed alpha
Helix 3	AA3	A	598	603	Right-handed alpha
Helix 4	AA4	A	604	607	Right-handed 310
Helix 5	AA5	A	624	639	Right-handed alpha
Helix 6	AA6	A	641	659	Right-handed alpha
Helix 7	AA7	A	660	670	Right-handed alpha
Helix 8	AA8	A	670	681	Right-handed alpha
Helix 9	AA9	A	688	703	Right-handed alpha
Helix 10	AB1	A	706	719	Right-handed alpha
Helix 11	AB2	A	721	733	Right-handed alpha
Helix 12	AB3	A	743	751	Right-handed alpha
Helix 13	AB4	A	754	764	Right-handed alpha
Helix 14	AB5	A	767	781	Right-handed alpha
Helix 15	AB6	A	783	795	Right-handed alpha
Helix 16	AB7	A	834	853	Right-handed alpha
Helix 17	AB8	A	1006	1011	Right-handed alpha
Helix 18	AB9	A	1027	1034	Right-handed alpha
Helix 19	AC1	A	1051	1057	Right-handed 310
Helix 20	AC2	A	1101	1106	Right-handed alpha
Helix 21	AC3	A	1240	1245	Right-handed 310
Helix 22	AC4	A	1261	1267	Right-handed 310
Helix 23	AC5	A	1285	1291	Right-handed 310
Helix 24	AC6	A	1314	1328	Right-handed alpha
Helix 25	AC7	A	1347	1355	Right-handed alpha
Helix 26	AC8	A	1398	1402	Right-handed 310
Helix 27	AC9	A	1404	1409	Right-handed 310
Helix 28	AD1	A	1431	1442	Right-handed alpha
Helix 29	AD2	A	1463	1465	Right-handed 310
Helix 30	AD3	A	1466	1473	Right-handed alpha
Helix 31	AD4	A	1494	1510	Right-handed alpha
Helix 32	AD5	A	1517	1520	Right-handed 310
Helix 33	AD6	A	1525	1538	Right-handed alpha
Helix 34	AD7	A	1550	1560	Right-handed alpha
Helix 35	AD8	A	1565	1567	Right-handed 310
Helix 36	AD9	A	1568	1579	Right-handed alpha
Helix 37	AE1	A	1599	1608	Right-handed alpha
Helix 38	AE2	A	1609	1613	Right-handed 310
Helix 39	AE3	A	1645	1656	Right-handed alpha
Helix 40	AE4	A	1703	1712	Right-handed alpha
Helix 41	AE5	A	1770	1792	Right-handed alpha
Helix 42	AE6	A	1793	1796	Right-handed 310
Helix 43	AE7	A	1829	1835	Right-handed alpha
Helix 44	AE8	A	1853	1855	Right-handed 310
Helix 45	AE9	A	1914	1926	Right-handed alpha
Helix 46	AF1	A	1954	1962	Right-handed alpha
Helix 47	AF2	A	1963	1966	Right-handed 310
Helix 48	AF3	A	1967	1988	Right-handed alpha
Helix 49	AF4	A	1996	1998	Right-handed 310
Helix 50	AF5	A	2040	2046	Right-handed alpha
Helix 51	AF6	A	2053	2069	Right-handed alpha
Helix 52	AF7	A	2094	2099	Right-handed alpha
Helix 53	AF8	A	2104	2115	Right-handed alpha
Helix 54	AF9	A	2118	2122	Right-handed 310
Helix 55	AG1	A	2124	2133	Right-handed alpha
Helix 56	AG2	A	2134	2139	Right-handed alpha
Helix 57	AG3	A	2278	2282	Right-handed 310
Helix 58	AG4	A	2308	2312	Right-handed 310
Helix 59	AG5	A	2339	2344	Right-handed 310
Helix 60	AG6	A	2346	2351	Right-handed alpha
Helix 61	AG7	A	2389	2396	Right-handed alpha
Helix 62	AG8	A	2499	2527	Right-handed alpha
Helix 63	AG9	B	559	571	Right-handed alpha
Helix 64	AH1	B	585	596	Right-handed alpha
Helix 65	AH2	B	598	603	Right-handed alpha
Helix 66	AH3	B	604	607	Right-handed 310
Helix 67	AH4	B	624	639	Right-handed alpha
Helix 68	AH5	B	641	659	Right-handed alpha
Helix 69	AH6	B	660	670	Right-handed alpha
Helix 70	AH7	B	670	681	Right-handed alpha
Helix 71	AH8	B	688	703	Right-handed alpha
Helix 72	AH9	B	706	719	Right-handed alpha
Helix 73	AI1	B	721	733	Right-handed alpha
Helix 74	AI2	B	743	751	Right-handed alpha
Helix 75	AI3	B	754	764	Right-handed alpha
Helix 76	AI4	B	767	781	Right-handed alpha
Helix 77	AI5	B	783	795	Right-handed alpha
Helix 78	AI6	B	814	819	Right-handed alpha
Helix 79	AI7	B	834	853	Right-handed alpha
Helix 80	AI8	B	1006	1011	Right-handed alpha
Helix 81	AI9	B	1027	1034	Right-handed alpha
Helix 82	AJ1	B	1051	1057	Right-handed 310
Helix 83	AJ2	B	1101	1106	Right-handed alpha
Helix 84	AJ3	B	1240	1245	Right-handed 310
Helix 85	AJ4	B	1261	1267	Right-handed 310
Helix 86	AJ5	B	1285	1291	Right-handed 310
Helix 87	AJ6	B	1314	1328	Right-handed alpha
Helix 88	AJ7	B	1347	1355	Right-handed alpha
Helix 89	AJ8	B	1398	1402	Right-handed 310
Helix 90	AJ9	B	1404	1409	Right-handed 310
Helix 91	AK1	B	1431	1442	Right-handed alpha
Helix 92	AK2	B	1463	1465	Right-handed 310
Helix 93	AK3	B	1466	1473	Right-handed alpha
Helix 94	AK4	B	1494	1510	Right-handed alpha
Helix 95	AK5	B	1517	1520	Right-handed 310
Helix 96	AK6	B	1525	1538	Right-handed alpha
Helix 97	AK7	B	1550	1560	Right-handed alpha
Helix 98	AK8	B	1565	1567	Right-handed 310
Helix 99	AK9	B	1568	1579	Right-handed alpha
Helix 100	AL1	B	1599	1608	Right-handed alpha
Helix 101	AL2	B	1609	1613	Right-handed 310
Helix 102	AL3	B	1645	1656	Right-handed alpha
Helix 103	AL4	B	1703	1712	Right-handed alpha
Helix 104	AL5	B	1770	1792	Right-handed alpha
Helix 105	AL6	B	1793	1796	Right-handed 310
Helix 106	AL7	B	1829	1835	Right-handed alpha
Helix 107	AL8	B	1853	1855	Right-handed 310
Helix 108	AL9	B	1914	1926	Right-handed alpha
Helix 109	AM1	B	1954	1962	Right-handed alpha
Helix 110	AM2	B	1963	1966	Right-handed 310
Helix 111	AM3	B	1967	1988	Right-handed alpha
Helix 112	AM4	B	1996	1998	Right-handed 310
Helix 113	AM5	B	2040	2046	Right-handed alpha
Helix 114	AM6	B	2053	2069	Right-handed alpha
Helix 115	AM7	B	2094	2099	Right-handed alpha
Helix 116	AM8	B	2104	2115	Right-handed alpha
Helix 117	AM9	B	2118	2122	Right-handed 310
Helix 118	AN1	B	2124	2133	Right-handed alpha
Helix 119	AN2	B	2134	2139	Right-handed alpha
Helix 120	AN3	B	2278	2282	Right-handed 310
Helix 121	AN4	B	2308	2312	Right-handed 310
Helix 122	AN5	B	2339	2344	Right-handed 310
Helix 123	AN6	B	2346	2351	Right-handed alpha
Helix 124	AN7	B	2389	2396	Right-handed alpha
Helix 125	AN8	B	2499	2527	Right-handed alpha

There are 34 sheets in PDB entry 8U8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	797	first strand
Strand 2	A	802	804	anti-parallel
Strand 3	A	987	988	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1015	1017	first strand
Strand 2	A	1039	1041	parallel
Strand 3	A	1062	1064	parallel
Strand 4	A	1088	1089	parallel
Strand 5	A	1111	1113	parallel
Strand 6	A	1133	1135	parallel
Strand 7	A	1157	1159	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1177	1179	first strand
Strand 2	A	1200	1202	parallel
Strand 3	A	1224	1226	parallel
Strand 4	A	1250	1251	parallel
Strand 5	A	1273	1274	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1329	1331	first strand
Strand 2	A	1522	1524	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1376	1378	first strand
Strand 2	A	1388	1394	anti-parallel
Strand 3	A	1334	1341	parallel
Strand 4	A	1413	1418	parallel
Strand 5	A	1447	1451	parallel
Strand 6	A	1482	1487	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1548	1549	first strand
Strand 2	A	1595	1598	anti-parallel
Strand 3	A	1582	1583	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1679	1681	first strand
Strand 2	B	1730	1733	anti-parallel
Strand 3	B	1740	1741	anti-parallel
Strand 4	B	1747	1750	anti-parallel
Strand 5	B	1765	1768	anti-parallel
Strand 6	B	1690	1693	anti-parallel
Strand 7	B	1811	1814	anti-parallel
Strand 8	B	1825	1828	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1825	1828	first strand
Strand 2	A	1811	1814	anti-parallel
Strand 3	A	1690	1693	anti-parallel
Strand 4	A	1765	1768	anti-parallel
Strand 5	A	1747	1750	anti-parallel
Strand 6	A	1740	1741	anti-parallel
Strand 7	A	1730	1733	anti-parallel
Strand 8	B	1679	1681	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1850	1851	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1893	1898	first strand
Strand 2	A	1901	1907	anti-parallel
Strand 3	A	1944	1948	anti-parallel
Strand 4	A	1935	1939	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2145	first strand
Strand 2	A	2491	2497	anti-parallel
Strand 3	A	2468	2475	anti-parallel
Strand 4	A	2455	2462	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2166	2167	first strand
Strand 2	A	2179	2183	anti-parallel
Strand 3	A	2188	2192	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2207	first strand
Strand 2	A	2212	2219	anti-parallel
Strand 3	A	2224	2228	anti-parallel
Strand 4	A	2235	2237	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2251	first strand
Strand 2	A	2262	2267	anti-parallel
Strand 3	A	2271	2276	anti-parallel
Strand 4	A	2289	2292	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2304	2305	first strand
Strand 2	A	2315	2319	anti-parallel
Strand 3	A	2322	2326	anti-parallel
Strand 4	A	2332	2337	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2358	first strand
Strand 2	A	2362	2367	anti-parallel
Strand 3	A	2372	2377	anti-parallel
Strand 4	A	2383	2388	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2419	first strand
Strand 2	A	2424	2429	anti-parallel
Strand 3	A	2434	2438	anti-parallel
Strand 4	A	2443	2448	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	797	first strand
Strand 2	B	802	804	anti-parallel
Strand 3	B	987	988	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1015	1017	first strand
Strand 2	B	1039	1041	parallel
Strand 3	B	1062	1064	parallel
Strand 4	B	1088	1089	parallel
Strand 5	B	1111	1113	parallel
Strand 6	B	1133	1135	parallel
Strand 7	B	1157	1159	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1177	1179	first strand
Strand 2	B	1200	1202	parallel
Strand 3	B	1224	1226	parallel
Strand 4	B	1250	1251	parallel
Strand 5	B	1273	1274	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1329	1331	first strand
Strand 2	B	1522	1524	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1376	1378	first strand
Strand 2	B	1388	1394	anti-parallel
Strand 3	B	1334	1341	parallel
Strand 4	B	1413	1418	parallel
Strand 5	B	1447	1451	parallel
Strand 6	B	1482	1487	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1548	1549	first strand
Strand 2	B	1595	1598	anti-parallel
Strand 3	B	1582	1583	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1840	1841	first strand
Strand 2	B	1850	1851	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1896	1898	first strand
Strand 2	B	1901	1907	anti-parallel
Strand 3	B	1944	1948	anti-parallel
Strand 4	B	1935	1939	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2000	2002	first strand
Strand 2	B	2013	2015	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2140	2145	first strand
Strand 2	B	2491	2497	anti-parallel
Strand 3	B	2468	2475	anti-parallel
Strand 4	B	2455	2462	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2166	2167	first strand
Strand 2	B	2179	2183	anti-parallel
Strand 3	B	2188	2192	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2199	2207	first strand
Strand 2	B	2212	2219	anti-parallel
Strand 3	B	2224	2228	anti-parallel
Strand 4	B	2235	2237	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2245	2251	first strand
Strand 2	B	2262	2267	anti-parallel
Strand 3	B	2271	2276	anti-parallel
Strand 4	B	2289	2292	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2304	2305	first strand
Strand 2	B	2315	2319	anti-parallel
Strand 3	B	2322	2326	anti-parallel
Strand 4	B	2332	2337	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2354	2358	first strand
Strand 2	B	2362	2367	anti-parallel
Strand 3	B	2372	2377	anti-parallel
Strand 4	B	2383	2388	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2414	2419	first strand
Strand 2	B	2424	2429	anti-parallel
Strand 3	B	2434	2438	anti-parallel
Strand 4	B	2443	2448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U8B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8B