Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U8D entry

There are 4 chains in PDB entry 8U8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 85GLY 547
B
 MET 3TRP 455
C
 ASP 32ASN 88
D
 LEU 10ASN 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8U8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 97Right-handed alpha
Helix 2
AA2
A
119 123Right-handed 310
Helix 3
AA3
A
137 154Right-handed alpha
Helix 4
AA4
A
156 179Right-handed alpha
Helix 5
AA5
A
205 216Right-handed alpha
Helix 6
AA6
A
257 273Right-handed alpha
Helix 7
AA7
A
274 276Right-handed 310
Helix 8
AA8
A
279 298Right-handed alpha
Helix 9
AA9
A
301 326Right-handed alpha
Helix 10
AB1
A
330 355Right-handed alpha
Helix 11
AB2
A
361 373Right-handed alpha
Helix 12
AB3
A
377 385Right-handed alpha
Helix 13
AB4
A
387 392Right-handed alpha
Helix 14
AB5
A
393 407Right-handed alpha
Helix 15
AB6
A
425 434Right-handed alpha
Helix 16
AB7
A
439 447Right-handed alpha
Helix 17
AB8
A
449 463Right-handed alpha
Helix 18
AB9
A
474 482Right-handed alpha
Helix 19
AC1
A
485 496Right-handed alpha
Helix 20
AC2
A
508 511Right-handed 310
Helix 21
AC3
A
529 538Right-handed alpha
Helix 22
AC4
A
540 547Right-handed alpha
Helix 23
AC5
B
4 13Right-handed alpha
Helix 24
AC6
B
26 38Right-handed alpha
Helix 25
AC7
B
41 51Right-handed alpha
Helix 26
AC8
B
58 74Right-handed alpha
Helix 27
AC9
B
83 100Right-handed alpha
Helix 28
AD1
B
105 130Right-handed alpha
Helix 29
AD2
B
139 156Right-handed alpha
Helix 30
AD3
B
169 174Right-handed alpha
Helix 31
AD4
B
174 189Right-handed alpha
Helix 32
AD5
B
191 193Right-handed 310
Helix 33
AD6
B
194 206Right-handed alpha
Helix 34
AD7
B
210 214Right-handed 310
Helix 35
AD8
B
215 233Right-handed alpha
Helix 36
AD9
B
235 253Right-handed alpha
Helix 37
AE1
B
258 278Right-handed alpha
Helix 38
AE2
B
292 308Right-handed alpha
Helix 39
AE3
B
310 321Right-handed alpha
Helix 40
AE4
B
321 328Right-handed alpha
Helix 41
AE5
B
330 355Right-handed alpha
Helix 42
AE6
B
365 377Right-handed alpha
Helix 43
AE7
B
399 410Right-handed alpha
Helix 44
AE8
B
431 435Right-handed 310
Helix 45
AE9
B
438 447Right-handed alpha
Helix 46
AF1
C
71 88Right-handed alpha
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There are 2 sheets in PDB entry 8U8D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
505 507anti-parallel
Strand 3
A
499 501anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 364first strand
Strand 2
B
423 426anti-parallel
Strand 3
B
415 418anti-parallel
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