Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U8F entry

There are 4 chains in PDB entry 8U8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 14	LEU 394
B	LEU 4	ASN 340
G	ALA 7	ARG 62
R	SER 39	CYS 313

There are 25 helices in PDB entry 8U8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	38	Right-handed alpha
Helix 2	AA2	A	52	61	Right-handed alpha
Helix 3	AA3	A	233	239	Right-handed 310
Helix 4	AA4	A	264	279	Right-handed alpha
Helix 5	AA5	A	293	304	Right-handed alpha
Helix 6	AA6	A	307	312	Right-handed alpha
Helix 7	AA7	A	313	316	Right-handed 310
Helix 8	AA8	A	331	350	Right-handed alpha
Helix 9	AA9	A	370	391	Right-handed alpha
Helix 10	AB1	B	5	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	35	37	Right-handed 310
Helix 13	AB4	G	8	24	Right-handed alpha
Helix 14	AB5	G	29	44	Right-handed alpha
Helix 15	AB6	R	44	68	Right-handed alpha
Helix 16	AB7	R	73	101	Right-handed alpha
Helix 17	AB8	R	105	140	Right-handed alpha
Helix 18	AB9	R	142	146	Right-handed 310
Helix 19	AC1	R	147	170	Right-handed alpha
Helix 20	AC2	R	191	230	Right-handed alpha
Helix 21	AC3	R	244	253	Right-handed alpha
Helix 22	AC4	R	254	270	Right-handed alpha
Helix 23	AC5	R	275	282	Right-handed alpha
Helix 24	AC6	R	282	298	Right-handed alpha
Helix 25	AC7	R	301	313	Right-handed alpha

There are 8 sheets in PDB entry 8U8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	362	363	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	337	339	anti-parallel
Strand 3	B	327	329	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	240	243	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	307	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8F