Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U8I entry

There are 7 chains in PDB entry 8U8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 213MET 784
B
 MET 208SER 787
C
 ASN 207SER 787
D
 VAL 211SER 787
E
 GLY 218SER 787
F
 GLN 222SER 768
G
 ALA 1ALA 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are158 helices in PDB entry 8U8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
219 236Right-handed alpha
Helix 2
AA2
A
236 244Right-handed alpha
Helix 3
AA3
A
260 273Right-handed alpha
Helix 4
AA4
A
282 284Right-handed 310
Helix 5
AA5
A
291 307Right-handed alpha
Helix 6
AA6
A
316 319Right-handed 310
Helix 7
AA7
A
328 344Right-handed alpha
Helix 8
AA8
A
346 350Right-handed 310
Helix 9
AA9
A
364 369Right-handed 310
Helix 10
AB1
A
383 395Right-handed alpha
Helix 11
AB2
A
405 413Right-handed alpha
Helix 12
AB3
A
418 439Right-handed alpha
Helix 13
AB4
A
458 469Right-handed alpha
Helix 14
AB5
A
472 476Right-handed 310
Helix 15
AB6
A
492 509Right-handed alpha
Helix 16
AB7
A
509 517Right-handed alpha
Helix 17
AB8
A
533 545Right-handed alpha
Helix 18
AB9
A
555 558Right-handed 310
Helix 19
AC1
A
563 577Right-handed alpha
Helix 20
AC2
A
606 620Right-handed alpha
Helix 21
AC3
A
635 639Right-handed 310
Helix 22
AC4
A
659 671Right-handed alpha
Helix 23
AC5
A
681 689Right-handed alpha
Helix 24
AC6
A
693 725Right-handed alpha
Helix 25
AC7
A
754 762Right-handed alpha
Helix 26
AC8
A
763 765Right-handed 310
Helix 27
AC9
A
770 784Right-handed alpha
Helix 28
AD1
B
219 236Right-handed alpha
Helix 29
AD2
B
236 244Right-handed alpha
Helix 30
AD3
B
260 272Right-handed alpha
Helix 31
AD4
B
281 285Right-handed 310
Helix 32
AD5
B
291 307Right-handed alpha
Helix 33
AD6
B
316 319Right-handed 310
Helix 34
AD7
B
328 343Right-handed alpha
Helix 35
AD8
B
359 363Right-handed 310
Helix 36
AD9
B
364 369Right-handed alpha
Helix 37
AE1
B
383 395Right-handed alpha
Helix 38
AE2
B
405 413Right-handed alpha
Helix 39
AE3
B
418 437Right-handed alpha
Helix 40
AE4
B
448 453Right-handed alpha
Helix 41
AE5
B
458 469Right-handed alpha
Helix 42
AE6
B
472 478Right-handed 310
Helix 43
AE7
B
485 489Right-handed 310
Helix 44
AE8
B
492 509Right-handed alpha
Helix 45
AE9
B
509 517Right-handed alpha
Helix 46
AF1
B
533 545Right-handed alpha
Helix 47
AF2
B
554 558Right-handed 310
Helix 48
AF3
B
563 579Right-handed alpha
Helix 49
AF4
B
588 593Right-handed alpha
Helix 50
AF5
B
605 619Right-handed alpha
Helix 51
AF6
B
635 639Right-handed 310
Helix 52
AF7
B
640 645Right-handed alpha
Helix 53
AF8
B
659 671Right-handed alpha
Helix 54
AF9
B
682 689Right-handed alpha
Helix 55
AG1
B
693 722Right-handed alpha
Helix 56
AG2
B
754 762Right-handed alpha
Helix 57
AG3
B
770 787Right-handed alpha
Helix 58
AG4
C
213 217Right-handed 310
Helix 59
AG5
C
219 236Right-handed alpha
Helix 60
AG6
C
236 244Right-handed alpha
Helix 61
AG7
C
260 272Right-handed alpha
Helix 62
AG8
C
281 285Right-handed 310
Helix 63
AG9
C
291 307Right-handed alpha
Helix 64
AH1
C
316 319Right-handed 310
Helix 65
AH2
C
328 343Right-handed alpha
Helix 66
AH3
C
364 368Right-handed 310
Helix 67
AH4
C
383 395Right-handed alpha
Helix 68
AH5
C
405 413Right-handed alpha
Helix 69
AH6
C
418 439Right-handed alpha
Helix 70
AH7
C
450 454Right-handed alpha
Helix 71
AH8
C
458 469Right-handed alpha
Helix 72
AH9
C
472 476Right-handed 310
Helix 73
AI1
C
492 509Right-handed alpha
Helix 74
AI2
C
509 517Right-handed alpha
Helix 75
AI3
C
533 545Right-handed alpha
Helix 76
AI4
C
563 579Right-handed alpha
Helix 77
AI5
C
588 593Right-handed alpha
Helix 78
AI6
C
605 619Right-handed alpha
Helix 79
AI7
C
635 639Right-handed 310
Helix 80
AI8
C
640 645Right-handed alpha
Helix 81
AI9
C
659 671Right-handed alpha
Helix 82
AJ1
C
682 690Right-handed alpha
Helix 83
AJ2
C
693 722Right-handed alpha
Helix 84
AJ3
C
754 762Right-handed alpha
Helix 85
AJ4
C
763 765Right-handed 310
Helix 86
AJ5
C
770 787Right-handed alpha
Helix 87
AJ6
D
219 236Right-handed alpha
Helix 88
AJ7
D
236 244Right-handed alpha
Helix 89
AJ8
D
260 272Right-handed alpha
Helix 90
AJ9
D
291 307Right-handed alpha
Helix 91
AK1
D
316 319Right-handed 310
Helix 92
AK2
D
328 343Right-handed alpha
Helix 93
AK3
D
383 398Right-handed alpha
Helix 94
AK4
D
405 413Right-handed alpha
Helix 95
AK5
D
418 440Right-handed alpha
Helix 96
AK6
D
449 454Right-handed alpha
Helix 97
AK7
D
458 469Right-handed alpha
Helix 98
AK8
D
471 475Right-handed 310
Helix 99
AK9
D
492 509Right-handed alpha
Helix 100
AL1
D
509 517Right-handed alpha
Helix 101
AL2
D
533 544Right-handed alpha
Helix 102
AL3
D
554 558Right-handed 310
Helix 103
AL4
D
564 579Right-handed alpha
Helix 104
AL5
D
588 593Right-handed alpha
Helix 105
AL6
D
601 619Right-handed alpha
Helix 106
AL7
D
635 639Right-handed 310
Helix 107
AL8
D
659 671Right-handed alpha
Helix 108
AL9
D
682 688Right-handed alpha
Helix 109
AM1
D
693 722Right-handed alpha
Helix 110
AM2
D
754 764Right-handed alpha
Helix 111
AM3
D
770 787Right-handed alpha
Helix 112
AM4
E
219 236Right-handed alpha
Helix 113
AM5
E
237 244Right-handed alpha
Helix 114
AM6
E
260 272Right-handed alpha
Helix 115
AM7
E
280 285Right-handed alpha
Helix 116
AM8
E
291 306Right-handed alpha
Helix 117
AM9
E
315 320Right-handed 310
Helix 118
AN1
E
328 343Right-handed alpha
Helix 119
AN2
E
384 395Right-handed alpha
Helix 120
AN3
E
418 436Right-handed alpha
Helix 121
AN4
E
458 468Right-handed alpha
Helix 122
AN5
E
492 509Right-handed alpha
Helix 123
AN6
E
509 517Right-handed alpha
Helix 124
AN7
E
533 543Right-handed alpha
Helix 125
AN8
E
563 578Right-handed alpha
Helix 126
AN9
E
588 593Right-handed alpha
Helix 127
AO1
E
601 619Right-handed alpha
Helix 128
AO2
E
635 639Right-handed 310
Helix 129
AO3
E
660 671Right-handed alpha
Helix 130
AO4
E
681 688Right-handed alpha
Helix 131
AO5
E
693 713Right-handed alpha
Helix 132
AO6
E
754 762Right-handed alpha
Helix 133
AO7
E
771 787Right-handed alpha
Helix 134
AO8
F
223 236Right-handed alpha
Helix 135
AO9
F
236 244Right-handed alpha
Helix 136
AP1
F
261 272Right-handed alpha
Helix 137
AP2
F
281 285Right-handed 310
Helix 138
AP3
F
290 307Right-handed alpha
Helix 139
AP4
F
315 320Right-handed alpha
Helix 140
AP5
F
329 344Right-handed alpha
Helix 141
AP6
F
384 395Right-handed alpha
Helix 142
AP7
F
396 398Right-handed 310
Helix 143
AP8
F
405 413Right-handed alpha
Helix 144
AP9
F
419 436Right-handed alpha
Helix 145
AQ1
F
449 454Right-handed alpha
Helix 146
AQ2
F
458 468Right-handed alpha
Helix 147
AQ3
F
497 508Right-handed alpha
Helix 148
AQ4
F
510 516Right-handed alpha
Helix 149
AQ5
F
533 544Right-handed alpha
Helix 150
AQ6
F
554 558Right-handed 310
Helix 151
AQ7
F
563 579Right-handed alpha
Helix 152
AQ8
F
588 594Right-handed alpha
Helix 153
AQ9
F
601 619Right-handed alpha
Helix 154
AR1
F
660 671Right-handed alpha
Helix 155
AR2
F
682 689Right-handed alpha
Helix 156
AR3
F
693 719Right-handed alpha
Helix 157
AR4
F
754 762Right-handed alpha
Helix 158
AR5
F
763 765Right-handed 310
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There are 12 sheets in PDB entry 8U8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 280first strand
Strand 2
A
310 314parallel
Strand 3
A
352 356parallel
Strand 4
A
250 254parallel
Strand 5
A
375 378parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 553first strand
Strand 2
A
582 587parallel
Strand 3
A
627 632parallel
Strand 4
A
523 527parallel
Strand 5
A
651 654parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 279first strand
Strand 2
B
309 314parallel
Strand 3
B
351 357parallel
Strand 4
B
250 254parallel
Strand 5
B
375 378parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
548 552first strand
Strand 2
B
582 587parallel
Strand 3
B
627 632parallel
Strand 4
B
524 527parallel
Strand 5
B
651 654parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
275 279first strand
Strand 2
C
309 314parallel
Strand 3
C
351 357parallel
Strand 4
C
250 254parallel
Strand 5
C
375 378parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
548 552first strand
Strand 2
C
582 587parallel
Strand 3
C
627 633parallel
Strand 4
C
524 527parallel
Strand 5
C
651 654parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 276first strand
Strand 2
D
309 314parallel
Strand 3
D
352 357parallel
Strand 4
D
250 254parallel
Strand 5
D
375 378parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
548 552first strand
Strand 2
D
582 587parallel
Strand 3
D
627 633parallel
Strand 4
D
524 527parallel
Strand 5
D
651 654parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
276 279first strand
Strand 2
E
310 313parallel
Strand 3
E
352 354parallel
Strand 4
E
250 254parallel
Strand 5
E
375 378parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
548 552first strand
Strand 2
E
582 587parallel
Strand 3
E
627 632parallel
Strand 4
E
524 527parallel
Strand 5
E
651 654parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
276 279first strand
Strand 2
F
310 314parallel
Strand 3
F
352 356parallel
Strand 4
F
250 254parallel
Strand 5
F
375 378parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
550 552first strand
Strand 2
F
582 587parallel
Strand 3
F
627 633parallel
Strand 4
F
524 527parallel
Strand 5
F
653 654parallel
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