Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U8M entry

There are 4 chains in PDB entry 8U8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 166VAL 281
B
 SER 166VAL 281
C
 SER 166VAL 281
D
 SER 166VAL 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8U8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
171 185Right-handed alpha
Helix 2
AA2
A
186 189Right-handed 310
Helix 3
AA3
A
190 195Right-handed alpha
Helix 4
AA4
A
196 207Right-handed alpha
Helix 5
AA5
A
214 226Right-handed alpha
Helix 6
AA6
A
227 230Right-handed 310
Helix 7
AA7
A
236 247Right-handed alpha
Helix 8
AA8
A
252 263Right-handed alpha
Helix 9
AA9
B
171 185Right-handed alpha
Helix 10
AB1
B
186 189Right-handed 310
Helix 11
AB2
B
190 195Right-handed alpha
Helix 12
AB3
B
196 207Right-handed alpha
Helix 13
AB4
B
215 226Right-handed alpha
Helix 14
AB5
B
227 230Right-handed 310
Helix 15
AB6
B
236 247Right-handed alpha
Helix 16
AB7
B
252 264Right-handed alpha
Helix 17
AB8
C
171 185Right-handed alpha
Helix 18
AB9
C
186 189Right-handed 310
Helix 19
AC1
C
190 195Right-handed alpha
Helix 20
AC2
C
196 207Right-handed alpha
Helix 21
AC3
C
215 226Right-handed alpha
Helix 22
AC4
C
227 230Right-handed 310
Helix 23
AC5
C
236 247Right-handed alpha
Helix 24
AC6
C
252 264Right-handed alpha
Helix 25
AC7
D
171 185Right-handed alpha
Helix 26
AC8
D
186 189Right-handed 310
Helix 27
AC9
D
190 195Right-handed alpha
Helix 28
AD1
D
196 207Right-handed alpha
Helix 29
AD2
D
214 226Right-handed alpha
Helix 30
AD3
D
227 230Right-handed 310
Helix 31
AD4
D
236 247Right-handed alpha
Helix 32
AD5
D
252 264Right-handed alpha
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There are 8 sheets in PDB entry 8U8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
B
212 214anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
B
169 170anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 269first strand
Strand 2
A
275 280anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 269first strand
Strand 2
B
275 280anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
D
212 213anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 214first strand
Strand 2
D
168 170anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 269first strand
Strand 2
C
275 280anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
265 269first strand
Strand 2
D
275 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il