Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U8V entry

There are 6 chains in PDB entry 8U8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 149	ASP 357
B	ARG 149	VAL 355
E	SER 220	SER 1230
N	A -24	C 4
R	G 1	C 9
T	G -12	T 17

There are 67 helices in PDB entry 8U8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	149	155	Right-handed alpha
Helix 2	AA2	A	160	165	Right-handed alpha
Helix 3	AA3	A	208	223	Right-handed alpha
Helix 4	AA4	A	243	260	Right-handed alpha
Helix 5	AA5	A	264	269	Right-handed alpha
Helix 6	AA6	A	278	285	Right-handed alpha
Helix 7	AA7	A	296	305	Right-handed alpha
Helix 8	AA8	A	321	335	Right-handed alpha
Helix 9	AA9	A	341	354	Right-handed alpha
Helix 10	AB1	B	150	155	Right-handed alpha
Helix 11	AB2	B	160	166	Right-handed alpha
Helix 12	AB3	B	208	221	Right-handed alpha
Helix 13	AB4	B	243	262	Right-handed alpha
Helix 14	AB5	B	278	286	Right-handed alpha
Helix 15	AB6	B	296	304	Right-handed alpha
Helix 16	AB7	B	321	330	Right-handed alpha
Helix 17	AB8	B	336	340	Right-handed 310
Helix 18	AB9	B	341	353	Right-handed alpha
Helix 19	AC1	E	221	236	Right-handed alpha
Helix 20	AC2	E	238	243	Right-handed alpha
Helix 21	AC3	E	245	252	Right-handed alpha
Helix 22	AC4	E	253	257	Right-handed 310
Helix 23	AC5	E	263	274	Right-handed alpha
Helix 24	AC6	E	280	291	Right-handed alpha
Helix 25	AC7	E	297	307	Right-handed alpha
Helix 26	AC8	E	315	325	Right-handed alpha
Helix 27	AC9	E	332	337	Right-handed alpha
Helix 28	AD1	E	340	353	Right-handed alpha
Helix 29	AD2	E	392	409	Right-handed alpha
Helix 30	AD3	E	424	459	Right-handed alpha
Helix 31	AD4	E	467	473	Right-handed alpha
Helix 32	AD5	E	475	489	Right-handed alpha
Helix 33	AD6	E	497	520	Right-handed alpha
Helix 34	AD7	E	521	534	Right-handed alpha
Helix 35	AD8	E	535	537	Right-handed 310
Helix 36	AD9	E	548	555	Right-handed alpha
Helix 37	AE1	E	568	586	Right-handed alpha
Helix 38	AE2	E	624	634	Right-handed alpha
Helix 39	AE3	E	644	646	Right-handed 310
Helix 40	AE4	E	678	687	Right-handed alpha
Helix 41	AE5	E	688	691	Right-handed 310
Helix 42	AE6	E	692	704	Right-handed alpha
Helix 43	AE7	E	710	723	Right-handed alpha
Helix 44	AE8	E	726	730	Right-handed 310
Helix 45	AE9	E	734	738	Right-handed 310
Helix 46	AF1	E	751	763	Right-handed alpha
Helix 47	AF2	E	764	789	Right-handed alpha
Helix 48	AF3	E	818	824	Right-handed alpha
Helix 49	AF4	E	837	850	Right-handed alpha
Helix 50	AF5	E	856	865	Right-handed alpha
Helix 51	AF6	E	867	877	Right-handed alpha
Helix 52	AF7	E	890	906	Right-handed alpha
Helix 53	AF8	E	909	912	Right-handed 310
Helix 54	AF9	E	925	932	Right-handed alpha
Helix 55	AG1	E	954	969	Right-handed alpha
Helix 56	AG2	E	975	982	Right-handed alpha
Helix 57	AG3	E	986	997	Right-handed alpha
Helix 58	AG4	E	1002	1017	Right-handed alpha
Helix 59	AG5	E	1025	1034	Right-handed alpha
Helix 60	AG6	E	1036	1044	Right-handed alpha
Helix 61	AG7	E	1047	1064	Right-handed alpha
Helix 62	AG8	E	1111	1117	Right-handed alpha
Helix 63	AG9	E	1118	1141	Right-handed alpha
Helix 64	AH1	E	1159	1176	Right-handed alpha
Helix 65	AH2	E	1179	1192	Right-handed alpha
Helix 66	AH3	E	1197	1210	Right-handed alpha
Helix 67	AH4	E	1221	1225	Right-handed 310

There are 10 sheets in PDB entry 8U8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	170	175	anti-parallel
Strand 4	A	228	233	parallel
Strand 5	A	273	277	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	196	first strand
Strand 2	B	180	185	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	228	233	parallel
Strand 5	B	273	277	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	411	415	first strand
Strand 2	E	638	642	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	496	first strand
Strand 2	E	616	622	anti-parallel
Strand 3	E	607	613	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	588	589	first strand
Strand 2	E	603	604	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	793	795	first strand
Strand 2	E	706	709	anti-parallel
Strand 3	E	825	827	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	798	800	first strand
Strand 2	E	806	808	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	831	832	first strand
Strand 2	E	914	915	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	919	922	first strand
Strand 2	E	1152	1155	anti-parallel
Strand 3	E	1147	1149	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1069	1071	first strand
Strand 2	E	1077	1079	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8V