Analysis of interatomic Contacts of Structural Units in PDB entry:
8U8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U8X entry

There is 1 chain in PDB entry 8U8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 712LEU 1028
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8U8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
716 718Right-handed 310
Helix 2
AA2
A
770 778Right-handed alpha
Helix 3
AA3
A
809 818Right-handed alpha
Helix 4
AA4
A
819 821Right-handed 310
Helix 5
AA5
A
822 843Right-handed alpha
Helix 6
AA6
A
851 853Right-handed 310
Helix 7
AA7
A
869 875Right-handed alpha
Helix 8
AA8
A
877 885Right-handed 310
Helix 9
AA9
A
889 893Right-handed 310
Helix 10
AB1
A
894 901Right-handed alpha
Helix 11
AB2
A
904 921Right-handed alpha
Helix 12
AB3
A
931 933Right-handed 310
Helix 13
AB4
A
934 941Right-handed alpha
Helix 14
AB5
A
952 963Right-handed alpha
Helix 15
AB6
A
966 970Right-handed 310
Helix 16
AB7
A
972 985Right-handed alpha
Helix 17
AB8
A
986 990Right-handed 310
Helix 18
AB9
A
1023 1027Right-handed 310
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There are 2 sheets in PDB entry 8U8X. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 714first strand
Strand 2
A
791 794parallel
Strand 3
A
798 803anti-parallel
Strand 4
A
748 755anti-parallel
Strand 5
A
732 739anti-parallel
Strand 6
A
720 729anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 859first strand
Strand 2
A
862 865anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il