Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U9E entry

There are 2 chains in PDB entry 8U9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 17LEU 272
B
 MET 17LEU 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8U9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 39Right-handed alpha
Helix 2
AA2
A
64 75Right-handed alpha
Helix 3
AA3
A
87 98Right-handed alpha
Helix 4
AA4
A
118 122Right-handed 310
Helix 5
AA5
A
132 142Right-handed alpha
Helix 6
AA6
A
158 177Right-handed alpha
Helix 7
AA7
A
178 181Right-handed 310
Helix 8
AA8
A
182 191Right-handed alpha
Helix 9
AA9
A
193 204Right-handed alpha
Helix 10
AB1
A
218 228Right-handed alpha
Helix 11
AB2
A
237 242Right-handed 310
Helix 12
AB3
A
244 257Right-handed alpha
Helix 13
AB4
A
261 271Right-handed alpha
Helix 14
AB5
B
28 39Right-handed alpha
Helix 15
AB6
B
64 75Right-handed alpha
Helix 16
AB7
B
87 97Right-handed alpha
Helix 17
AB8
B
118 122Right-handed 310
Helix 18
AB9
B
132 142Right-handed alpha
Helix 19
AC1
B
158 177Right-handed alpha
Helix 20
AC2
B
178 181Right-handed 310
Helix 21
AC3
B
182 191Right-handed alpha
Helix 22
AC4
B
193 204Right-handed alpha
Helix 23
AC5
B
218 228Right-handed alpha
Helix 24
AC6
B
237 242Right-handed 310
Helix 25
AC7
B
244 257Right-handed alpha
Helix 26
AC8
B
261 271Right-handed alpha
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There are 2 sheets in PDB entry 8U9E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
42 45parallel
Strand 3
A
79 83parallel
Strand 4
A
101 104parallel
Strand 5
A
126 130parallel
Strand 6
A
146 149parallel
Strand 7
A
210 213parallel
Strand 8
A
232 235parallel
Strand 9
A
21 26parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
42 45parallel
Strand 3
B
79 83parallel
Strand 4
B
101 104parallel
Strand 5
B
126 130parallel
Strand 6
B
146 149parallel
Strand 7
B
209 211parallel
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