Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U9F entry

There is 1 chain in PDB entry 8U9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 36TYR 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8U9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 62Right-handed 310
Helix 2
AA2
A
94 103Right-handed alpha
Helix 3
AA3
A
103 108Right-handed alpha
Helix 4
AA4
A
108 114Right-handed alpha
Helix 5
AA5
A
135 153Right-handed alpha
Helix 6
AA6
A
168 172Right-handed 310
Helix 7
AA7
A
178 191Right-handed alpha
Helix 8
AA8
A
202 214Right-handed 310
Helix 9
AA9
A
234 236Right-handed 310
Helix 10
AB1
A
250 264Right-handed alpha
Helix 11
AB2
A
279 292Right-handed alpha
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There are 3 sheets in PDB entry 8U9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
74 85anti-parallel
Strand 3
A
117 123parallel
Strand 4
A
157 161parallel
Strand 5
A
195 199parallel
Strand 6
A
216 218parallel
Strand 7
A
238 239parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
74 85anti-parallel
Strand 3
A
46 52parallel
Strand 4
A
268 272parallel
Strand 5
A
242 244parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
64 66anti-parallel
Strand 3
A
296 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il