Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U9P entry

There are 7 chains in PDB entry 8U9P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 211	GLN 764
B	VAL 211	ARG 788
C	VAL 211	SER 787
D	VAL 211	LYS 785
E	ASN 200	PHE 796
F	LYS 221	VAL 769
G	ALA 1	ALA 23

There are161 helices in PDB entry 8U9P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	236	Right-handed alpha
Helix 2	AA2	A	237	244	Right-handed alpha
Helix 3	AA3	A	260	272	Right-handed alpha
Helix 4	AA4	A	282	284	Right-handed 310
Helix 5	AA5	A	291	307	Right-handed alpha
Helix 6	AA6	A	316	320	Right-handed 310
Helix 7	AA7	A	329	344	Right-handed alpha
Helix 8	AA8	A	364	369	Right-handed alpha
Helix 9	AA9	A	383	396	Right-handed alpha
Helix 10	AB1	A	405	413	Right-handed alpha
Helix 11	AB2	A	419	441	Right-handed alpha
Helix 12	AB3	A	459	469	Right-handed alpha
Helix 13	AB4	A	473	478	Right-handed 310
Helix 14	AB5	A	492	509	Right-handed alpha
Helix 15	AB6	A	509	517	Right-handed alpha
Helix 16	AB7	A	533	545	Right-handed alpha
Helix 17	AB8	A	555	557	Right-handed 310
Helix 18	AB9	A	563	579	Right-handed alpha
Helix 19	AC1	A	589	592	Right-handed 310
Helix 20	AC2	A	602	604	Right-handed 310
Helix 21	AC3	A	605	619	Right-handed alpha
Helix 22	AC4	A	635	639	Right-handed 310
Helix 23	AC5	A	640	645	Right-handed alpha
Helix 24	AC6	A	659	671	Right-handed alpha
Helix 25	AC7	A	682	689	Right-handed alpha
Helix 26	AC8	A	693	725	Right-handed alpha
Helix 27	AC9	A	735	741	Right-handed alpha
Helix 28	AD1	A	742	746	Right-handed 310
Helix 29	AD2	A	751	764	Right-handed alpha
Helix 30	AD3	B	219	232	Right-handed alpha
Helix 31	AD4	B	233	235	Right-handed 310
Helix 32	AD5	B	236	244	Right-handed alpha
Helix 33	AD6	B	260	272	Right-handed alpha
Helix 34	AD7	B	282	285	Right-handed 310
Helix 35	AD8	B	291	307	Right-handed alpha
Helix 36	AD9	B	316	319	Right-handed 310
Helix 37	AE1	B	329	343	Right-handed alpha
Helix 38	AE2	B	359	363	Right-handed 310
Helix 39	AE3	B	364	369	Right-handed 310
Helix 40	AE4	B	383	395	Right-handed alpha
Helix 41	AE5	B	405	413	Right-handed alpha
Helix 42	AE6	B	418	434	Right-handed alpha
Helix 43	AE7	B	448	453	Right-handed alpha
Helix 44	AE8	B	458	469	Right-handed alpha
Helix 45	AE9	B	471	478	Right-handed 310
Helix 46	AF1	B	485	489	Right-handed 310
Helix 47	AF2	B	492	509	Right-handed alpha
Helix 48	AF3	B	509	517	Right-handed alpha
Helix 49	AF4	B	533	544	Right-handed alpha
Helix 50	AF5	B	554	558	Right-handed 310
Helix 51	AF6	B	563	579	Right-handed alpha
Helix 52	AF7	B	605	619	Right-handed alpha
Helix 53	AF8	B	640	645	Right-handed alpha
Helix 54	AF9	B	659	671	Right-handed alpha
Helix 55	AG1	B	682	689	Right-handed alpha
Helix 56	AG2	B	693	722	Right-handed alpha
Helix 57	AG3	B	754	762	Right-handed alpha
Helix 58	AG4	B	770	787	Right-handed alpha
Helix 59	AG5	C	212	216	Right-handed 310
Helix 60	AG6	C	219	236	Right-handed alpha
Helix 61	AG7	C	236	244	Right-handed alpha
Helix 62	AG8	C	260	272	Right-handed alpha
Helix 63	AG9	C	282	285	Right-handed 310
Helix 64	AH1	C	291	307	Right-handed alpha
Helix 65	AH2	C	316	320	Right-handed 310
Helix 66	AH3	C	329	343	Right-handed alpha
Helix 67	AH4	C	364	368	Right-handed 310
Helix 68	AH5	C	383	395	Right-handed alpha
Helix 69	AH6	C	405	413	Right-handed alpha
Helix 70	AH7	C	418	440	Right-handed alpha
Helix 71	AH8	C	448	453	Right-handed alpha
Helix 72	AH9	C	458	469	Right-handed alpha
Helix 73	AI1	C	492	509	Right-handed alpha
Helix 74	AI2	C	509	517	Right-handed alpha
Helix 75	AI3	C	533	545	Right-handed alpha
Helix 76	AI4	C	563	579	Right-handed alpha
Helix 77	AI5	C	588	593	Right-handed alpha
Helix 78	AI6	C	605	619	Right-handed alpha
Helix 79	AI7	C	635	639	Right-handed 310
Helix 80	AI8	C	640	644	Right-handed 310
Helix 81	AI9	C	659	671	Right-handed alpha
Helix 82	AJ1	C	682	690	Right-handed alpha
Helix 83	AJ2	C	693	722	Right-handed alpha
Helix 84	AJ3	C	754	762	Right-handed alpha
Helix 85	AJ4	C	770	787	Right-handed alpha
Helix 86	AJ5	D	219	236	Right-handed alpha
Helix 87	AJ6	D	237	244	Right-handed alpha
Helix 88	AJ7	D	260	272	Right-handed alpha
Helix 89	AJ8	D	291	306	Right-handed alpha
Helix 90	AJ9	D	316	319	Right-handed 310
Helix 91	AK1	D	328	343	Right-handed alpha
Helix 92	AK2	D	359	363	Right-handed 310
Helix 93	AK3	D	364	368	Right-handed 310
Helix 94	AK4	D	383	395	Right-handed alpha
Helix 95	AK5	D	406	413	Right-handed alpha
Helix 96	AK6	D	418	436	Right-handed alpha
Helix 97	AK7	D	458	469	Right-handed alpha
Helix 98	AK8	D	471	477	Right-handed 310
Helix 99	AK9	D	485	489	Right-handed 310
Helix 100	AL1	D	492	509	Right-handed alpha
Helix 101	AL2	D	509	517	Right-handed alpha
Helix 102	AL3	D	533	544	Right-handed alpha
Helix 103	AL4	D	564	579	Right-handed alpha
Helix 104	AL5	D	588	593	Right-handed alpha
Helix 105	AL6	D	601	619	Right-handed alpha
Helix 106	AL7	D	635	639	Right-handed 310
Helix 107	AL8	D	659	671	Right-handed alpha
Helix 108	AL9	D	682	688	Right-handed alpha
Helix 109	AM1	D	693	716	Right-handed alpha
Helix 110	AM2	D	754	763	Right-handed alpha
Helix 111	AM3	D	770	785	Right-handed alpha
Helix 112	AM4	E	201	209	Right-handed alpha
Helix 113	AM5	E	212	216	Right-handed 310
Helix 114	AM6	E	219	236	Right-handed alpha
Helix 115	AM7	E	237	244	Right-handed alpha
Helix 116	AM8	E	260	272	Right-handed alpha
Helix 117	AM9	E	280	285	Right-handed alpha
Helix 118	AN1	E	291	306	Right-handed alpha
Helix 119	AN2	E	328	343	Right-handed alpha
Helix 120	AN3	E	384	395	Right-handed alpha
Helix 121	AN4	E	405	413	Right-handed alpha
Helix 122	AN5	E	418	436	Right-handed alpha
Helix 123	AN6	E	458	469	Right-handed alpha
Helix 124	AN7	E	492	509	Right-handed alpha
Helix 125	AN8	E	509	517	Right-handed alpha
Helix 126	AN9	E	533	543	Right-handed alpha
Helix 127	AO1	E	563	578	Right-handed alpha
Helix 128	AO2	E	588	593	Right-handed alpha
Helix 129	AO3	E	601	619	Right-handed alpha
Helix 130	AO4	E	635	639	Right-handed 310
Helix 131	AO5	E	660	671	Right-handed alpha
Helix 132	AO6	E	681	688	Right-handed alpha
Helix 133	AO7	E	693	713	Right-handed alpha
Helix 134	AO8	E	754	762	Right-handed alpha
Helix 135	AO9	E	771	788	Right-handed alpha
Helix 136	AP1	F	222	236	Right-handed alpha
Helix 137	AP2	F	236	244	Right-handed alpha
Helix 138	AP3	F	260	272	Right-handed alpha
Helix 139	AP4	F	281	285	Right-handed 310
Helix 140	AP5	F	290	307	Right-handed alpha
Helix 141	AP6	F	315	320	Right-handed alpha
Helix 142	AP7	F	329	344	Right-handed alpha
Helix 143	AP8	F	384	395	Right-handed alpha
Helix 144	AP9	F	396	398	Right-handed 310
Helix 145	AQ1	F	405	413	Right-handed alpha
Helix 146	AQ2	F	419	436	Right-handed alpha
Helix 147	AQ3	F	449	454	Right-handed alpha
Helix 148	AQ4	F	458	468	Right-handed alpha
Helix 149	AQ5	F	485	489	Right-handed 310
Helix 150	AQ6	F	492	508	Right-handed alpha
Helix 151	AQ7	F	510	516	Right-handed alpha
Helix 152	AQ8	F	533	544	Right-handed alpha
Helix 153	AQ9	F	554	558	Right-handed 310
Helix 154	AR1	F	563	579	Right-handed alpha
Helix 155	AR2	F	588	594	Right-handed alpha
Helix 156	AR3	F	601	619	Right-handed alpha
Helix 157	AR4	F	660	671	Right-handed alpha
Helix 158	AR5	F	682	689	Right-handed alpha
Helix 159	AR6	F	693	725	Right-handed alpha
Helix 160	AR7	F	754	762	Right-handed alpha
Helix 161	AR8	F	763	765	Right-handed 310

There are 12 sheets in PDB entry 8U9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	280	first strand
Strand 2	A	310	314	parallel
Strand 3	A	352	356	parallel
Strand 4	A	250	254	parallel
Strand 5	A	375	378	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	553	first strand
Strand 2	A	582	587	parallel
Strand 3	A	627	633	parallel
Strand 4	A	523	527	parallel
Strand 5	A	652	654	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	280	first strand
Strand 2	B	309	314	parallel
Strand 3	B	351	357	parallel
Strand 4	B	250	254	parallel
Strand 5	B	375	378	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	582	587	parallel
Strand 3	B	627	632	parallel
Strand 4	B	524	527	parallel
Strand 5	B	652	654	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	280	first strand
Strand 2	C	309	314	parallel
Strand 3	C	352	357	parallel
Strand 4	C	250	254	parallel
Strand 5	C	375	378	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	552	first strand
Strand 2	C	582	587	parallel
Strand 3	C	627	633	parallel
Strand 4	C	524	527	parallel
Strand 5	C	651	654	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	351	356	parallel
Strand 3	D	309	314	parallel
Strand 4	D	275	279	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	552	first strand
Strand 2	D	582	587	parallel
Strand 3	D	627	633	parallel
Strand 4	D	524	527	parallel
Strand 5	D	651	654	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	279	first strand
Strand 2	E	310	314	parallel
Strand 3	E	352	357	parallel
Strand 4	E	250	254	parallel
Strand 5	E	375	378	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	552	first strand
Strand 2	E	582	587	parallel
Strand 3	E	627	632	parallel
Strand 4	E	524	527	parallel
Strand 5	E	651	654	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	279	first strand
Strand 2	F	310	314	parallel
Strand 3	F	352	356	parallel
Strand 4	F	250	254	parallel
Strand 5	F	373	378	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	552	first strand
Strand 2	F	582	587	parallel
Strand 3	F	627	633	parallel
Strand 4	F	524	527	parallel
Strand 5	F	653	654	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U9P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9P