Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U9Q entry

There are 7 chains in PDB entry 8U9Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 212	MET 784
B	ASN 200	PHE 796
C	ASN 200	PHE 796
D	ASP 203	PHE 796
E	VAL 211	SER 787
F	LYS 221	THR 764
G	ALA 1	ALA 22

There are163 helices in PDB entry 8U9Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	236	Right-handed alpha
Helix 2	AA2	A	236	244	Right-handed alpha
Helix 3	AA3	A	260	272	Right-handed alpha
Helix 4	AA4	A	282	284	Right-handed 310
Helix 5	AA5	A	290	307	Right-handed alpha
Helix 6	AA6	A	316	320	Right-handed 310
Helix 7	AA7	A	328	345	Right-handed alpha
Helix 8	AA8	A	346	350	Right-handed 310
Helix 9	AA9	A	364	369	Right-handed 310
Helix 10	AB1	A	383	396	Right-handed alpha
Helix 11	AB2	A	406	413	Right-handed alpha
Helix 12	AB3	A	418	441	Right-handed alpha
Helix 13	AB4	A	448	454	Right-handed alpha
Helix 14	AB5	A	458	468	Right-handed alpha
Helix 15	AB6	A	472	476	Right-handed 310
Helix 16	AB7	A	492	509	Right-handed alpha
Helix 17	AB8	A	509	517	Right-handed alpha
Helix 18	AB9	A	533	544	Right-handed alpha
Helix 19	AC1	A	555	557	Right-handed 310
Helix 20	AC2	A	563	579	Right-handed alpha
Helix 21	AC3	A	589	592	Right-handed 310
Helix 22	AC4	A	605	619	Right-handed alpha
Helix 23	AC5	A	635	639	Right-handed 310
Helix 24	AC6	A	640	645	Right-handed alpha
Helix 25	AC7	A	659	671	Right-handed alpha
Helix 26	AC8	A	682	689	Right-handed alpha
Helix 27	AC9	A	693	725	Right-handed alpha
Helix 28	AD1	A	754	764	Right-handed alpha
Helix 29	AD2	A	770	784	Right-handed alpha
Helix 30	AD3	B	201	210	Right-handed alpha
Helix 31	AD4	B	219	236	Right-handed alpha
Helix 32	AD5	B	236	244	Right-handed alpha
Helix 33	AD6	B	260	272	Right-handed alpha
Helix 34	AD7	B	281	285	Right-handed 310
Helix 35	AD8	B	291	307	Right-handed alpha
Helix 36	AD9	B	315	319	Right-handed 310
Helix 37	AE1	B	328	343	Right-handed alpha
Helix 38	AE2	B	359	363	Right-handed 310
Helix 39	AE3	B	364	369	Right-handed 310
Helix 40	AE4	B	383	396	Right-handed alpha
Helix 41	AE5	B	405	413	Right-handed alpha
Helix 42	AE6	B	418	438	Right-handed alpha
Helix 43	AE7	B	448	453	Right-handed alpha
Helix 44	AE8	B	458	468	Right-handed alpha
Helix 45	AE9	B	492	509	Right-handed alpha
Helix 46	AF1	B	509	517	Right-handed alpha
Helix 47	AF2	B	533	545	Right-handed alpha
Helix 48	AF3	B	554	558	Right-handed 310
Helix 49	AF4	B	563	579	Right-handed alpha
Helix 50	AF5	B	588	593	Right-handed alpha
Helix 51	AF6	B	605	619	Right-handed alpha
Helix 52	AF7	B	659	671	Right-handed alpha
Helix 53	AF8	B	682	689	Right-handed alpha
Helix 54	AF9	B	693	722	Right-handed alpha
Helix 55	AG1	B	754	762	Right-handed alpha
Helix 56	AG2	B	770	789	Right-handed alpha
Helix 57	AG3	C	201	210	Right-handed alpha
Helix 58	AG4	C	219	231	Right-handed alpha
Helix 59	AG5	C	231	236	Right-handed alpha
Helix 60	AG6	C	236	244	Right-handed alpha
Helix 61	AG7	C	260	272	Right-handed alpha
Helix 62	AG8	C	281	285	Right-handed 310
Helix 63	AG9	C	290	307	Right-handed alpha
Helix 64	AH1	C	316	319	Right-handed 310
Helix 65	AH2	C	329	343	Right-handed alpha
Helix 66	AH3	C	364	368	Right-handed 310
Helix 67	AH4	C	383	395	Right-handed alpha
Helix 68	AH5	C	405	413	Right-handed alpha
Helix 69	AH6	C	418	440	Right-handed alpha
Helix 70	AH7	C	448	453	Right-handed alpha
Helix 71	AH8	C	458	469	Right-handed alpha
Helix 72	AH9	C	472	478	Right-handed 310
Helix 73	AI1	C	492	509	Right-handed alpha
Helix 74	AI2	C	509	517	Right-handed alpha
Helix 75	AI3	C	533	545	Right-handed alpha
Helix 76	AI4	C	554	558	Right-handed 310
Helix 77	AI5	C	563	579	Right-handed alpha
Helix 78	AI6	C	588	593	Right-handed alpha
Helix 79	AI7	C	605	619	Right-handed alpha
Helix 80	AI8	C	635	639	Right-handed 310
Helix 81	AI9	C	640	645	Right-handed alpha
Helix 82	AJ1	C	659	671	Right-handed alpha
Helix 83	AJ2	C	681	690	Right-handed alpha
Helix 84	AJ3	C	693	722	Right-handed alpha
Helix 85	AJ4	C	754	762	Right-handed alpha
Helix 86	AJ5	C	770	788	Right-handed alpha
Helix 87	AJ6	D	204	210	Right-handed alpha
Helix 88	AJ7	D	219	236	Right-handed alpha
Helix 89	AJ8	D	236	244	Right-handed alpha
Helix 90	AJ9	D	260	272	Right-handed alpha
Helix 91	AK1	D	291	307	Right-handed alpha
Helix 92	AK2	D	316	319	Right-handed 310
Helix 93	AK3	D	328	343	Right-handed alpha
Helix 94	AK4	D	359	363	Right-handed 310
Helix 95	AK5	D	364	368	Right-handed 310
Helix 96	AK6	D	383	395	Right-handed alpha
Helix 97	AK7	D	405	413	Right-handed alpha
Helix 98	AK8	D	418	436	Right-handed alpha
Helix 99	AK9	D	448	453	Right-handed alpha
Helix 100	AL1	D	458	468	Right-handed alpha
Helix 101	AL2	D	472	476	Right-handed alpha
Helix 102	AL3	D	492	509	Right-handed alpha
Helix 103	AL4	D	509	517	Right-handed alpha
Helix 104	AL5	D	533	544	Right-handed alpha
Helix 105	AL6	D	554	558	Right-handed 310
Helix 106	AL7	D	563	579	Right-handed alpha
Helix 107	AL8	D	588	593	Right-handed alpha
Helix 108	AL9	D	601	619	Right-handed alpha
Helix 109	AM1	D	635	639	Right-handed 310
Helix 110	AM2	D	640	645	Right-handed alpha
Helix 111	AM3	D	659	671	Right-handed alpha
Helix 112	AM4	D	682	688	Right-handed alpha
Helix 113	AM5	D	693	717	Right-handed alpha
Helix 114	AM6	D	754	763	Right-handed alpha
Helix 115	AM7	D	770	789	Right-handed alpha
Helix 116	AM8	E	212	216	Right-handed 310
Helix 117	AM9	E	219	236	Right-handed alpha
Helix 118	AN1	E	237	244	Right-handed alpha
Helix 119	AN2	E	260	272	Right-handed alpha
Helix 120	AN3	E	281	285	Right-handed alpha
Helix 121	AN4	E	290	306	Right-handed alpha
Helix 122	AN5	E	316	320	Right-handed 310
Helix 123	AN6	E	328	343	Right-handed alpha
Helix 124	AN7	E	384	395	Right-handed alpha
Helix 125	AN8	E	405	413	Right-handed alpha
Helix 126	AN9	E	421	436	Right-handed alpha
Helix 127	AO1	E	458	468	Right-handed alpha
Helix 128	AO2	E	492	509	Right-handed alpha
Helix 129	AO3	E	509	517	Right-handed alpha
Helix 130	AO4	E	533	543	Right-handed alpha
Helix 131	AO5	E	563	578	Right-handed alpha
Helix 132	AO6	E	588	593	Right-handed alpha
Helix 133	AO7	E	601	619	Right-handed alpha
Helix 134	AO8	E	635	639	Right-handed 310
Helix 135	AO9	E	660	671	Right-handed alpha
Helix 136	AP1	E	681	688	Right-handed alpha
Helix 137	AP2	E	693	713	Right-handed alpha
Helix 138	AP3	E	754	762	Right-handed alpha
Helix 139	AP4	E	771	787	Right-handed alpha
Helix 140	AP5	F	222	236	Right-handed alpha
Helix 141	AP6	F	236	244	Right-handed alpha
Helix 142	AP7	F	263	270	Right-handed alpha
Helix 143	AP8	F	281	285	Right-handed 310
Helix 144	AP9	F	290	307	Right-handed alpha
Helix 145	AQ1	F	315	320	Right-handed alpha
Helix 146	AQ2	F	329	343	Right-handed alpha
Helix 147	AQ3	F	384	395	Right-handed alpha
Helix 148	AQ4	F	396	398	Right-handed 310
Helix 149	AQ5	F	405	413	Right-handed alpha
Helix 150	AQ6	F	419	436	Right-handed alpha
Helix 151	AQ7	F	449	454	Right-handed alpha
Helix 152	AQ8	F	458	468	Right-handed alpha
Helix 153	AQ9	F	492	508	Right-handed alpha
Helix 154	AR1	F	510	516	Right-handed alpha
Helix 155	AR2	F	533	544	Right-handed alpha
Helix 156	AR3	F	554	558	Right-handed 310
Helix 157	AR4	F	563	579	Right-handed alpha
Helix 158	AR5	F	588	594	Right-handed alpha
Helix 159	AR6	F	605	619	Right-handed alpha
Helix 160	AR7	F	660	671	Right-handed alpha
Helix 161	AR8	F	682	689	Right-handed alpha
Helix 162	AR9	F	693	719	Right-handed alpha
Helix 163	AS1	F	754	762	Right-handed alpha

There are 12 sheets in PDB entry 8U9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	280	first strand
Strand 2	A	310	314	parallel
Strand 3	A	352	357	parallel
Strand 4	A	250	254	parallel
Strand 5	A	375	378	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	582	587	parallel
Strand 3	A	627	633	parallel
Strand 4	A	523	527	parallel
Strand 5	A	651	654	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	279	first strand
Strand 2	B	309	313	parallel
Strand 3	B	352	357	parallel
Strand 4	B	250	254	parallel
Strand 5	B	375	378	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	582	587	parallel
Strand 3	B	627	632	parallel
Strand 4	B	524	527	parallel
Strand 5	B	651	654	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	279	first strand
Strand 2	C	309	314	parallel
Strand 3	C	351	357	parallel
Strand 4	C	250	254	parallel
Strand 5	C	375	378	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	552	first strand
Strand 2	C	582	587	parallel
Strand 3	C	627	633	parallel
Strand 4	C	524	527	parallel
Strand 5	C	651	654	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	352	357	parallel
Strand 3	D	310	314	parallel
Strand 4	D	276	279	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	552	first strand
Strand 2	D	582	587	parallel
Strand 3	D	627	633	parallel
Strand 4	D	524	527	parallel
Strand 5	D	651	654	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	280	first strand
Strand 2	E	310	314	parallel
Strand 3	E	352	356	parallel
Strand 4	E	250	254	parallel
Strand 5	E	375	378	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	552	first strand
Strand 2	E	582	587	parallel
Strand 3	E	627	632	parallel
Strand 4	E	524	527	parallel
Strand 5	E	651	654	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	310	314	first strand
Strand 2	F	352	356	parallel
Strand 3	F	250	254	parallel
Strand 4	F	375	378	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	552	first strand
Strand 2	F	582	587	parallel
Strand 3	F	627	633	parallel
Strand 4	F	524	527	parallel
Strand 5	F	653	654	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U9Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9Q