Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U9R entry

There is 1 chain in PDB entry 8U9R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	TYR 1328

There are137 helices in PDB entry 8U9R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	95	104	Right-handed alpha
Helix 3	AA3	A	119	126	Right-handed alpha
Helix 4	AA4	A	131	143	Right-handed alpha
Helix 5	AA5	A	203	213	Right-handed alpha
Helix 6	AA6	A	219	223	Right-handed 310
Helix 7	AA7	A	230	233	Right-handed 310
Helix 8	AA8	A	243	247	Right-handed 310
Helix 9	AA9	A	260	282	Right-handed alpha
Helix 10	AB1	A	288	305	Right-handed alpha
Helix 11	AB2	A	324	330	Right-handed alpha
Helix 12	AB3	A	368	374	Right-handed alpha
Helix 13	AB4	A	384	395	Right-handed alpha
Helix 14	AB5	A	474	479	Right-handed alpha
Helix 15	AB6	A	494	503	Right-handed alpha
Helix 16	AB7	A	507	510	Right-handed 310
Helix 17	AB8	A	525	535	Right-handed alpha
Helix 18	AB9	A	542	553	Right-handed alpha
Helix 19	AC1	A	574	579	Right-handed alpha
Helix 20	AC2	A	618	623	Right-handed alpha
Helix 21	AC3	A	628	637	Right-handed alpha
Helix 22	AC4	A	638	651	Right-handed alpha
Helix 23	AC5	A	652	661	Right-handed alpha
Helix 24	AC6	A	665	670	Right-handed 310
Helix 25	AC7	A	675	697	Right-handed alpha
Helix 26	AC8	A	698	700	Right-handed 310
Helix 27	AC9	A	709	737	Right-handed alpha
Helix 28	AD1	A	741	750	Right-handed alpha
Helix 29	AD2	A	754	763	Right-handed alpha
Helix 30	AD3	A	809	827	Right-handed alpha
Helix 31	AD4	A	830	845	Right-handed alpha
Helix 32	AD5	A	867	871	Right-handed 310
Helix 33	AD6	A	889	898	Right-handed alpha
Helix 34	AD7	A	915	920	Right-handed alpha
Helix 35	AD8	A	922	947	Right-handed alpha
Helix 36	AD9	A	959	972	Right-handed alpha
Helix 37	AE1	A	982	996	Right-handed alpha
Helix 38	AE2	A	1004	1026	Right-handed alpha
Helix 39	AE3	A	1027	1034	Right-handed alpha
Helix 40	AE4	A	1038	1057	Right-handed alpha
Helix 41	AE5	A	1063	1080	Right-handed alpha
Helix 42	AE6	A	1097	1107	Right-handed alpha
Helix 43	AE7	A	1127	1139	Right-handed alpha
Helix 44	AE8	A	1142	1146	Right-handed alpha
Helix 45	AE9	A	1198	1205	Right-handed alpha
Helix 46	AF1	A	1209	1221	Right-handed alpha
Helix 47	AF2	A	1222	1224	Right-handed 310
Helix 48	AF3	A	1257	1268	Right-handed alpha
Helix 49	AF4	A	1312	1317	Right-handed alpha
Helix 50	AF5	A	1331	1340	Right-handed alpha
Helix 51	AF6	A	1340	1357	Right-handed alpha
Helix 52	AF7	A	1364	1377	Right-handed alpha
Helix 53	AF8	A	1395	1401	Right-handed alpha
Helix 54	AF9	A	1404	1415	Right-handed alpha
Helix 55	AG1	A	1423	1431	Right-handed alpha
Helix 56	AG2	A	1436	1439	Right-handed 310
Helix 57	AG3	A	1446	1453	Right-handed alpha
Helix 58	AG4	B	26	41	Right-handed alpha
Helix 59	AG5	B	44	56	Right-handed alpha
Helix 60	AG6	B	57	63	Right-handed alpha
Helix 61	AG7	B	113	121	Right-handed alpha
Helix 62	AG8	B	185	192	Right-handed alpha
Helix 63	AG9	B	282	290	Right-handed alpha
Helix 64	AH1	B	293	302	Right-handed alpha
Helix 65	AH2	B	307	322	Right-handed alpha
Helix 66	AH3	B	326	333	Right-handed alpha
Helix 67	AH4	B	334	335	Right-handed 310
Helix 68	AH5	B	348	349	Right-handed 310
Helix 69	AH6	B	350	358	Right-handed alpha
Helix 70	AH7	B	371	390	Right-handed alpha
Helix 71	AH8	B	400	402	Right-handed 310
Helix 72	AH9	B	408	429	Right-handed alpha
Helix 73	AI1	B	450	464	Right-handed alpha
Helix 74	AI2	B	487	496	Right-handed alpha
Helix 75	AI3	B	515	519	Right-handed 310
Helix 76	AI4	B	551	563	Right-handed alpha
Helix 77	AI5	B	565	569	Right-handed 310
Helix 78	AI6	B	592	607	Right-handed alpha
Helix 79	AI7	B	619	621	Right-handed 310
Helix 80	AI8	B	654	663	Right-handed alpha
Helix 81	AI9	B	664	666	Right-handed 310
Helix 82	AJ1	B	681	687	Right-handed alpha
Helix 83	AJ2	B	695	699	Right-handed alpha
Helix 84	AJ3	B	707	711	Right-handed 310
Helix 85	AJ4	B	744	749	Right-handed 310
Helix 86	AJ5	B	750	755	Right-handed alpha
Helix 87	AJ6	B	758	762	Right-handed 310
Helix 88	AJ7	B	763	774	Right-handed alpha
Helix 89	AJ8	B	784	788	Right-handed 310
Helix 90	AJ9	B	808	812	Right-handed 310
Helix 91	AK1	B	843	848	Right-handed alpha
Helix 92	AK2	B	889	893	Right-handed 310
Helix 93	AK3	B	1014	1017	Right-handed 310
Helix 94	AK4	B	1022	1039	Right-handed alpha
Helix 95	AK5	B	1051	1062	Right-handed alpha
Helix 96	AK6	B	1098	1102	Right-handed 310
Helix 97	AK7	B	1131	1142	Right-handed alpha
Helix 98	AK8	B	1143	1152	Right-handed alpha
Helix 99	AK9	B	1197	1210	Right-handed alpha
Helix 100	AL1	C	26	40	Right-handed alpha
Helix 101	AL2	C	59	70	Right-handed alpha
Helix 102	AL3	C	76	80	Right-handed 310
Helix 103	AL4	C	167	171	Right-handed 310
Helix 104	AL5	C	196	201	Right-handed alpha
Helix 105	AL6	C	204	208	Right-handed 310
Helix 106	AL7	C	239	261	Right-handed alpha
Helix 107	AL8	D	30	34	Right-handed 310
Helix 108	AL9	D	53	70	Right-handed alpha
Helix 109	AM1	D	122	131	Right-handed alpha
Helix 110	AM2	D	139	152	Right-handed alpha
Helix 111	AM3	D	156	169	Right-handed alpha
Helix 112	AM4	D	173	183	Right-handed alpha
Helix 113	AM5	D	187	195	Right-handed alpha
Helix 114	AM6	D	203	218	Right-handed alpha
Helix 115	AM7	E	6	26	Right-handed alpha
Helix 116	AM8	E	31	36	Right-handed alpha
Helix 117	AM9	E	38	45	Right-handed alpha
Helix 118	AN1	E	65	72	Right-handed alpha
Helix 119	AN2	E	89	104	Right-handed alpha
Helix 120	AN3	E	143	147	Right-handed 310
Helix 121	AN4	E	157	168	Right-handed alpha
Helix 122	AN5	E	171	175	Right-handed 310
Helix 123	AN6	E	182	188	Right-handed alpha
Helix 124	AN7	F	86	102	Right-handed alpha
Helix 125	AN8	F	116	127	Right-handed alpha
Helix 126	AN9	G	14	18	Right-handed 310
Helix 127	AO1	G	21	33	Right-handed alpha
Helix 128	AO2	G	113	115	Right-handed 310
Helix 129	AO3	I	61	65	Right-handed 310
Helix 130	AO4	J	17	22	Right-handed alpha
Helix 131	AO5	J	22	27	Right-handed alpha
Helix 132	AO6	J	31	39	Right-handed alpha
Helix 133	AO7	J	43	52	Right-handed alpha
Helix 134	AO8	J	55	60	Right-handed 310
Helix 135	AO9	K	5	10	Right-handed 310
Helix 136	AP1	K	42	52	Right-handed alpha
Helix 137	AP2	K	82	112	Right-handed alpha

There are 47 sheets in PDB entry 8U9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	B	1212	1217	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	91	first strand
Strand 2	A	235	241	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	181	184	anti-parallel
Strand 3	A	199	202	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	B	1128	1130	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1106	first strand
Strand 2	A	348	356	anti-parallel
Strand 3	A	486	490	anti-parallel
Strand 4	A	441	445	anti-parallel
Strand 5	A	455	463	anti-parallel
Strand 6	A	363	367	parallel
Strand 7	A	468	471	anti-parallel
Strand 8	A	348	356	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	412	414	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	541	first strand
Strand 2	A	572	573	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	566	first strand
Strand 2	H	96	104	anti-parallel
Strand 3	H	114	118	anti-parallel
Strand 4	H	121	125	anti-parallel
Strand 5	H	37	42	anti-parallel
Strand 6	H	24	29	anti-parallel
Strand 7	H	14	16	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	566	first strand
Strand 2	H	96	104	anti-parallel
Strand 3	H	140	143	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	590	first strand
Strand 2	A	605	608	anti-parallel
Strand 3	A	611	614	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	663	first strand
Strand 2	B	828	829	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	882	first strand
Strand 2	A	953	957	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1282	1292	first strand
Strand 2	A	1298	1308	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1228	first strand
Strand 2	A	1237	1241	anti-parallel
Strand 3	A	1191	1197	anti-parallel
Strand 4	A	1147	1154	anti-parallel
Strand 5	I	42	45	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	G	4	13	anti-parallel
Strand 3	G	68	77	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	A	1441	1445	anti-parallel
Strand 6	F	132	137	anti-parallel
Strand 7	F	143	147	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	G	4	13	anti-parallel
Strand 3	G	68	77	anti-parallel
Strand 4	G	47	48	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	127	130	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	108	110	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	212	anti-parallel
Strand 3	B	480	482	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	497	499	parallel
Strand 4	B	537	538	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	236	240	anti-parallel
Strand 3	B	254	258	anti-parallel
Strand 4	B	270	272	anti-parallel
Strand 5	B	279	281	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	690	694	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	740	742	anti-parallel
Strand 4	B	703	704	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	590	first strand
Strand 2	B	578	582	anti-parallel
Strand 3	B	623	626	parallel
Strand 4	B	615	617	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	948	956	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	824	first strand
Strand 2	B	1089	1094	anti-parallel
Strand 3	B	980	982	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	990	994	first strand
Strand 2	B	839	842	parallel
Strand 3	B	1010	1012	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	865	866	first strand
Strand 2	B	870	871	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	910	912	first strand
Strand 2	B	939	940	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1158	1163	first strand
Strand 2	B	1191	1196	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1172	1173	first strand
Strand 2	B	1180	1181	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	13	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	228	234	anti-parallel
Strand 4	C	173	177	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	54	first strand
Strand 2	C	152	162	anti-parallel
Strand 3	C	96	104	anti-parallel
Strand 4	C	119	120	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	145	147	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	78	82	anti-parallel
Strand 3	E	107	112	parallel
Strand 4	E	131	136	parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	155	first strand
Strand 2	E	195	200	anti-parallel
Strand 3	E	208	214	anti-parallel
Strand 4	E	177	178	parallel

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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	142	152	anti-parallel
Strand 3	G	157	162	anti-parallel
Strand 4	G	106	111	parallel
Strand 5	G	98	103	anti-parallel
Strand 6	G	86	94	anti-parallel
Strand 7	G	142	152	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	131	first strand
Strand 2	G	136	137	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	9	first strand
Strand 2	H	56	58	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	18	first strand
Strand 2	I	25	29	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	72	first strand
Strand 2	I	82	84	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U9R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9R