Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U9X entry

There is 1 chain in PDB entry 8U9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ARG 1326

There are129 helices in PDB entry 8U9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	96	104	Right-handed alpha
Helix 3	AA3	A	119	126	Right-handed alpha
Helix 4	AA4	A	132	141	Right-handed alpha
Helix 5	AA5	A	203	213	Right-handed alpha
Helix 6	AA6	A	215	223	Right-handed alpha
Helix 7	AA7	A	231	233	Right-handed 310
Helix 8	AA8	A	243	247	Right-handed 310
Helix 9	AA9	A	260	280	Right-handed alpha
Helix 10	AB1	A	285	305	Right-handed alpha
Helix 11	AB2	A	324	330	Right-handed alpha
Helix 12	AB3	A	367	372	Right-handed alpha
Helix 13	AB4	A	384	393	Right-handed alpha
Helix 14	AB5	A	418	422	Right-handed 310
Helix 15	AB6	A	451	455	Right-handed 310
Helix 16	AB7	A	471	479	Right-handed 310
Helix 17	AB8	A	495	504	Right-handed alpha
Helix 18	AB9	A	524	535	Right-handed alpha
Helix 19	AC1	A	542	553	Right-handed alpha
Helix 20	AC2	A	574	579	Right-handed alpha
Helix 21	AC3	A	580	582	Right-handed 310
Helix 22	AC4	A	628	637	Right-handed alpha
Helix 23	AC5	A	638	661	Right-handed alpha
Helix 24	AC6	A	665	670	Right-handed 310
Helix 25	AC7	A	673	698	Right-handed alpha
Helix 26	AC8	A	709	728	Right-handed alpha
Helix 27	AC9	A	741	748	Right-handed alpha
Helix 28	AD1	A	755	760	Right-handed alpha
Helix 29	AD2	A	809	829	Right-handed alpha
Helix 30	AD3	A	831	846	Right-handed alpha
Helix 31	AD4	A	889	898	Right-handed alpha
Helix 32	AD5	A	909	913	Right-handed 310
Helix 33	AD6	A	925	945	Right-handed alpha
Helix 34	AD7	A	959	972	Right-handed alpha
Helix 35	AD8	A	982	997	Right-handed alpha
Helix 36	AD9	A	1004	1026	Right-handed alpha
Helix 37	AE1	A	1027	1034	Right-handed alpha
Helix 38	AE2	A	1038	1057	Right-handed alpha
Helix 39	AE3	A	1063	1078	Right-handed alpha
Helix 40	AE4	A	1097	1107	Right-handed alpha
Helix 41	AE5	A	1127	1136	Right-handed alpha
Helix 42	AE6	A	1142	1147	Right-handed alpha
Helix 43	AE7	A	1165	1171	Right-handed alpha
Helix 44	AE8	A	1200	1205	Right-handed alpha
Helix 45	AE9	A	1208	1220	Right-handed alpha
Helix 46	AF1	A	1257	1270	Right-handed alpha
Helix 47	AF2	A	1312	1317	Right-handed alpha
Helix 48	AF3	A	1333	1340	Right-handed alpha
Helix 49	AF4	A	1340	1357	Right-handed alpha
Helix 50	AF5	A	1365	1377	Right-handed alpha
Helix 51	AF6	A	1395	1400	Right-handed alpha
Helix 52	AF7	A	1405	1415	Right-handed alpha
Helix 53	AF8	A	1423	1431	Right-handed alpha
Helix 54	AF9	A	1436	1440	Right-handed 310
Helix 55	AG1	A	1446	1453	Right-handed alpha
Helix 56	AG2	B	26	42	Right-handed alpha
Helix 57	AG3	B	44	57	Right-handed alpha
Helix 58	AG4	B	113	121	Right-handed alpha
Helix 59	AG5	B	179	184	Right-handed 310
Helix 60	AG6	B	185	192	Right-handed alpha
Helix 61	AG7	B	282	290	Right-handed alpha
Helix 62	AG8	B	297	302	Right-handed alpha
Helix 63	AG9	B	307	321	Right-handed alpha
Helix 64	AH1	B	326	333	Right-handed alpha
Helix 65	AH2	B	348	350	Right-handed 310
Helix 66	AH3	B	351	358	Right-handed alpha
Helix 67	AH4	B	370	390	Right-handed alpha
Helix 68	AH5	B	400	402	Right-handed 310
Helix 69	AH6	B	408	429	Right-handed alpha
Helix 70	AH7	B	450	464	Right-handed alpha
Helix 71	AH8	B	487	496	Right-handed alpha
Helix 72	AH9	B	551	560	Right-handed alpha
Helix 73	AI1	B	570	574	Right-handed 310
Helix 74	AI2	B	593	607	Right-handed alpha
Helix 75	AI3	B	619	621	Right-handed 310
Helix 76	AI4	B	654	663	Right-handed alpha
Helix 77	AI5	B	681	687	Right-handed alpha
Helix 78	AI6	B	744	749	Right-handed 310
Helix 79	AI7	B	752	756	Right-handed 310
Helix 80	AI8	B	758	762	Right-handed 310
Helix 81	AI9	B	763	774	Right-handed alpha
Helix 82	AJ1	B	806	812	Right-handed alpha
Helix 83	AJ2	B	843	848	Right-handed alpha
Helix 84	AJ3	B	889	893	Right-handed 310
Helix 85	AJ4	B	1013	1017	Right-handed 310
Helix 86	AJ5	B	1022	1039	Right-handed alpha
Helix 87	AJ6	B	1051	1063	Right-handed alpha
Helix 88	AJ7	B	1098	1103	Right-handed alpha
Helix 89	AJ8	B	1131	1140	Right-handed alpha
Helix 90	AJ9	B	1145	1152	Right-handed alpha
Helix 91	AK1	B	1197	1210	Right-handed alpha
Helix 92	AK2	C	26	40	Right-handed alpha
Helix 93	AK3	C	59	69	Right-handed alpha
Helix 94	AK4	C	82	86	Right-handed 310
Helix 95	AK5	C	167	171	Right-handed 310
Helix 96	AK6	C	197	201	Right-handed 310
Helix 97	AK7	C	239	266	Right-handed alpha
Helix 98	AK8	D	51	71	Right-handed alpha
Helix 99	AK9	D	72	73	Right-handed 310
Helix 100	AL1	D	118	120	Right-handed 310
Helix 101	AL2	D	121	133	Right-handed alpha
Helix 102	AL3	D	138	152	Right-handed alpha
Helix 103	AL4	D	156	168	Right-handed alpha
Helix 104	AL5	D	173	181	Right-handed alpha
Helix 105	AL6	D	187	195	Right-handed alpha
Helix 106	AL7	D	203	217	Right-handed alpha
Helix 107	AL8	E	5	11	Right-handed alpha
Helix 108	AL9	E	12	28	Right-handed alpha
Helix 109	AM1	E	31	37	Right-handed alpha
Helix 110	AM2	E	38	46	Right-handed alpha
Helix 111	AM3	E	67	72	Right-handed alpha
Helix 112	AM4	E	89	104	Right-handed alpha
Helix 113	AM5	E	136	141	Right-handed alpha
Helix 114	AM6	E	163	168	Right-handed alpha
Helix 115	AM7	E	171	175	Right-handed 310
Helix 116	AM8	E	182	188	Right-handed alpha
Helix 117	AM9	F	75	79	Right-handed 310
Helix 118	AN1	F	86	102	Right-handed alpha
Helix 119	AN2	F	116	127	Right-handed alpha
Helix 120	AN3	G	14	18	Right-handed 310
Helix 121	AN4	G	21	35	Right-handed alpha
Helix 122	AN5	J	16	26	Right-handed alpha
Helix 123	AN6	J	31	36	Right-handed alpha
Helix 124	AN7	J	37	40	Right-handed 310
Helix 125	AN8	J	43	52	Right-handed alpha
Helix 126	AN9	J	56	62	Right-handed alpha
Helix 127	AO1	K	5	10	Right-handed 310
Helix 128	AO2	K	42	51	Right-handed alpha
Helix 129	AO3	K	82	110	Right-handed alpha

There are 42 sheets in PDB entry 8U9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	19	anti-parallel
Strand 3	B	1214	1217	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	91	first strand
Strand 2	A	235	241	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	180	183	anti-parallel
Strand 3	A	200	202	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	B	1128	1130	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	457	460	parallel
Strand 3	A	442	445	anti-parallel
Strand 4	A	486	489	anti-parallel
Strand 5	A	348	355	anti-parallel
Strand 6	A	468	470	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	457	460	parallel
Strand 3	A	442	445	anti-parallel
Strand 4	A	486	489	anti-parallel
Strand 5	A	348	355	anti-parallel
Strand 6	B	1104	1106	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	541	first strand
Strand 2	A	572	573	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	605	607	anti-parallel
Strand 3	A	612	614	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	A	953	956	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1282	1286	first strand
Strand 2	A	1304	1308	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1191	1196	first strand
Strand 2	A	1149	1154	anti-parallel
Strand 3	I	42	45	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1227	first strand
Strand 2	A	1239	1241	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	147	first strand
Strand 2	F	133	137	anti-parallel
Strand 3	A	1443	1445	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	G	68	71	anti-parallel
Strand 6	G	10	12	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	127	130	anti-parallel
Strand 3	B	166	169	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	109	111	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	212	anti-parallel
Strand 3	B	480	482	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	497	499	parallel
Strand 4	B	536	538	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	234	240	anti-parallel
Strand 3	B	254	259	anti-parallel
Strand 4	B	269	273	anti-parallel
Strand 5	B	276	281	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	590	first strand
Strand 2	B	578	582	anti-parallel
Strand 3	B	623	627	parallel
Strand 4	B	614	617	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	637	first strand
Strand 2	B	691	693	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	704	first strand
Strand 2	B	740	741	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	822	first strand
Strand 2	B	1091	1094	anti-parallel
Strand 3	B	980	982	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	825	826	first strand
Strand 2	B	1085	1088	anti-parallel
Strand 3	B	1069	1070	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	990	994	first strand
Strand 2	B	839	842	parallel
Strand 3	B	1010	1011	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	859	first strand
Strand 2	B	962	969	anti-parallel
Strand 3	B	948	956	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1172	1174	first strand
Strand 2	B	1179	1181	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	13	first strand
Strand 2	C	17	22	anti-parallel
Strand 3	C	229	234	anti-parallel
Strand 4	C	173	179	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	97	104	anti-parallel
Strand 3	C	152	163	anti-parallel
Strand 4	C	42	54	anti-parallel
Strand 5	L	65	66	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	145	148	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	44	45	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	79	first strand
Strand 2	E	107	109	parallel
Strand 3	E	132	133	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	156	first strand
Strand 2	E	194	196	anti-parallel
Strand 3	E	212	214	anti-parallel
Strand 4	E	177	178	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	48	first strand
Strand 2	G	76	77	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	94	first strand
Strand 2	G	99	103	anti-parallel
Strand 3	G	106	109	anti-parallel
Strand 4	G	158	162	parallel
Strand 5	G	142	151	anti-parallel
Strand 6	G	86	94	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	122	first strand
Strand 2	G	129	130	anti-parallel
Strand 3	G	137	138	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	16	first strand
Strand 2	H	23	29	anti-parallel
Strand 3	H	37	43	anti-parallel
Strand 4	H	121	125	anti-parallel
Strand 5	H	114	118	anti-parallel
Strand 6	H	100	104	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	18	first strand
Strand 2	I	25	27	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	83	84	anti-parallel
Strand 3	I	101	103	anti-parallel
Strand 4	I	109	110	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	23	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	71	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9X