Analysis of interatomic Contacts of Structural Units in PDB entry:
8U9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U9Y entry

There are 5 chains in PDB entry 8U9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 409HIS 653
E
 ALA 9THR 224
F
 SER 1CYS 213
M
 THR 108CYS 213
N
 LYS 122ASP 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8U9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
437 442Right-handed 310
Helix 2
AA2
A
446 450Right-handed 310
Helix 3
AA3
A
451 457Right-handed alpha
Helix 4
AA4
A
543 547Right-handed 310
Helix 5
AA5
A
593 598Right-handed alpha
Helix 6
AA6
A
613 618Right-handed alpha
Helix 7
AA7
A
619 622Right-handed 310
Helix 8
AA8
E
87 91Right-handed 310
Helix 9
AA9
E
161 163Right-handed 310
Helix 10
AB1
E
192 194Right-handed 310
Helix 11
AB2
E
206 209Right-handed 310
Helix 12
AB3
F
26 30Right-handed 310
Helix 13
AB4
F
78 82Right-handed 310
Helix 14
AB5
F
120 126Right-handed alpha
Helix 15
AB6
F
182 187Right-handed alpha
Helix 16
AB7
M
122 126Right-handed 310
Helix 17
AB8
N
159 163Right-handed 310
Helix 18
AB9
N
191 196Right-handed 310
Helix 19
AC1
N
207 209Right-handed 310
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There are 19 sheets in PDB entry 8U9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
A
503 504anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
569 570anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
536 538anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 516first strand
Strand 2
A
506 509anti-parallel
Strand 3
A
551 556anti-parallel
Strand 4
A
560 565anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
636 644anti-parallel
Strand 3
A
625 633anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
113 117parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
46 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
17 23first strand
Strand 2
E
78 84anti-parallel
Strand 3
E
68 73anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 129first strand
Strand 2
E
140 148anti-parallel
Strand 3
E
181 190anti-parallel
Strand 4
E
169 175anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
156 159first strand
Strand 2
E
200 205anti-parallel
Strand 3
E
210 215anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 12first strand
Strand 2
F
101 105parallel
Strand 3
F
83 91anti-parallel
Strand 4
F
33 37anti-parallel
Strand 5
F
44 48anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 12first strand
Strand 2
F
101 105parallel
Strand 3
F
83 91anti-parallel
Strand 4
F
94 97anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
17 23first strand
Strand 2
F
69 75anti-parallel
Strand 3
F
61 66anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
113 117first strand
Strand 2
F
128 138anti-parallel
Strand 3
F
172 181anti-parallel
Strand 4
F
158 162anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
144 149first strand
Strand 2
F
190 196anti-parallel
Strand 3
F
204 209anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
114 117first strand
Strand 2
M
128 138anti-parallel
Strand 3
M
172 181anti-parallel
Strand 4
M
158 162anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
153 154first strand
Strand 2
M
144 149anti-parallel
Strand 3
M
190 196anti-parallel
Strand 4
M
204 209anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
127 129first strand
Strand 2
N
141 150anti-parallel
Strand 3
N
181 189anti-parallel
Strand 4
N
168 170anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
127 129first strand
Strand 2
N
141 150anti-parallel
Strand 3
N
181 189anti-parallel
Strand 4
N
174 175anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
155 158first strand
Strand 2
N
200 205anti-parallel
Strand 3
N
210 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il