Analysis of interatomic Contacts of Structural Units in PDB entry:
8UA1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UA1 entry

There are 7 chains in PDB entry 8UA1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 212	MET 784
B	ASN 200	SER 787
C	ASN 200	PHE 791
D	ASN 200	MET 784
E	VAL 211	MET 762
F	TYR 213	MET 784
G	ALA 0	ALA 22

There are168 helices in PDB entry 8UA1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	212	216	Right-handed 310
Helix 2	AA2	A	219	236	Right-handed alpha
Helix 3	AA3	A	236	244	Right-handed alpha
Helix 4	AA4	A	260	272	Right-handed alpha
Helix 5	AA5	A	282	285	Right-handed 310
Helix 6	AA6	A	291	307	Right-handed alpha
Helix 7	AA7	A	316	319	Right-handed 310
Helix 8	AA8	A	329	344	Right-handed alpha
Helix 9	AA9	A	359	363	Right-handed 310
Helix 10	AB1	A	364	369	Right-handed alpha
Helix 11	AB2	A	383	396	Right-handed alpha
Helix 12	AB3	A	405	413	Right-handed alpha
Helix 13	AB4	A	418	436	Right-handed alpha
Helix 14	AB5	A	440	445	Right-handed 310
Helix 15	AB6	A	448	454	Right-handed alpha
Helix 16	AB7	A	458	469	Right-handed alpha
Helix 17	AB8	A	472	476	Right-handed 310
Helix 18	AB9	A	485	489	Right-handed 310
Helix 19	AC1	A	492	509	Right-handed alpha
Helix 20	AC2	A	509	517	Right-handed alpha
Helix 21	AC3	A	533	544	Right-handed alpha
Helix 22	AC4	A	563	579	Right-handed alpha
Helix 23	AC5	A	605	619	Right-handed alpha
Helix 24	AC6	A	635	639	Right-handed 310
Helix 25	AC7	A	659	671	Right-handed alpha
Helix 26	AC8	A	681	689	Right-handed alpha
Helix 27	AC9	A	693	724	Right-handed alpha
Helix 28	AD1	A	754	762	Right-handed alpha
Helix 29	AD2	A	763	765	Right-handed 310
Helix 30	AD3	A	770	784	Right-handed alpha
Helix 31	AD4	B	201	210	Right-handed alpha
Helix 32	AD5	B	212	216	Right-handed 310
Helix 33	AD6	B	219	231	Right-handed alpha
Helix 34	AD7	B	236	244	Right-handed alpha
Helix 35	AD8	B	260	272	Right-handed alpha
Helix 36	AD9	B	282	285	Right-handed 310
Helix 37	AE1	B	291	307	Right-handed alpha
Helix 38	AE2	B	316	319	Right-handed 310
Helix 39	AE3	B	329	343	Right-handed alpha
Helix 40	AE4	B	359	363	Right-handed 310
Helix 41	AE5	B	364	368	Right-handed 310
Helix 42	AE6	B	383	395	Right-handed alpha
Helix 43	AE7	B	405	413	Right-handed alpha
Helix 44	AE8	B	418	436	Right-handed alpha
Helix 45	AE9	B	448	453	Right-handed alpha
Helix 46	AF1	B	458	469	Right-handed alpha
Helix 47	AF2	B	472	478	Right-handed 310
Helix 48	AF3	B	485	489	Right-handed 310
Helix 49	AF4	B	492	509	Right-handed alpha
Helix 50	AF5	B	509	517	Right-handed alpha
Helix 51	AF6	B	533	545	Right-handed alpha
Helix 52	AF7	B	554	558	Right-handed 310
Helix 53	AF8	B	563	579	Right-handed alpha
Helix 54	AF9	B	588	593	Right-handed alpha
Helix 55	AG1	B	605	619	Right-handed alpha
Helix 56	AG2	B	635	639	Right-handed 310
Helix 57	AG3	B	659	671	Right-handed alpha
Helix 58	AG4	B	682	689	Right-handed alpha
Helix 59	AG5	B	693	721	Right-handed alpha
Helix 60	AG6	B	754	762	Right-handed alpha
Helix 61	AG7	B	763	765	Right-handed 310
Helix 62	AG8	B	770	787	Right-handed alpha
Helix 63	AG9	C	201	209	Right-handed alpha
Helix 64	AH1	C	212	217	Right-handed 310
Helix 65	AH2	C	219	236	Right-handed alpha
Helix 66	AH3	C	236	244	Right-handed alpha
Helix 67	AH4	C	260	272	Right-handed alpha
Helix 68	AH5	C	280	284	Right-handed 310
Helix 69	AH6	C	291	307	Right-handed alpha
Helix 70	AH7	C	315	320	Right-handed alpha
Helix 71	AH8	C	329	343	Right-handed alpha
Helix 72	AH9	C	364	368	Right-handed 310
Helix 73	AI1	C	383	395	Right-handed alpha
Helix 74	AI2	C	405	413	Right-handed alpha
Helix 75	AI3	C	418	440	Right-handed alpha
Helix 76	AI4	C	448	453	Right-handed alpha
Helix 77	AI5	C	458	469	Right-handed alpha
Helix 78	AI6	C	471	478	Right-handed 310
Helix 79	AI7	C	485	489	Right-handed 310
Helix 80	AI8	C	492	509	Right-handed alpha
Helix 81	AI9	C	509	517	Right-handed alpha
Helix 82	AJ1	C	533	545	Right-handed alpha
Helix 83	AJ2	C	563	579	Right-handed alpha
Helix 84	AJ3	C	588	593	Right-handed alpha
Helix 85	AJ4	C	606	619	Right-handed alpha
Helix 86	AJ5	C	635	639	Right-handed 310
Helix 87	AJ6	C	659	671	Right-handed alpha
Helix 88	AJ7	C	682	690	Right-handed alpha
Helix 89	AJ8	C	693	722	Right-handed alpha
Helix 90	AJ9	C	754	762	Right-handed alpha
Helix 91	AK1	C	763	765	Right-handed 310
Helix 92	AK2	C	770	787	Right-handed alpha
Helix 93	AK3	D	201	210	Right-handed alpha
Helix 94	AK4	D	219	231	Right-handed alpha
Helix 95	AK5	D	231	236	Right-handed alpha
Helix 96	AK6	D	236	244	Right-handed alpha
Helix 97	AK7	D	260	272	Right-handed alpha
Helix 98	AK8	D	280	285	Right-handed alpha
Helix 99	AK9	D	291	307	Right-handed alpha
Helix 100	AL1	D	315	319	Right-handed 310
Helix 101	AL2	D	328	343	Right-handed alpha
Helix 102	AL3	D	359	363	Right-handed 310
Helix 103	AL4	D	364	368	Right-handed 310
Helix 104	AL5	D	383	395	Right-handed alpha
Helix 105	AL6	D	406	413	Right-handed alpha
Helix 106	AL7	D	418	439	Right-handed alpha
Helix 107	AL8	D	448	453	Right-handed alpha
Helix 108	AL9	D	458	469	Right-handed alpha
Helix 109	AM1	D	485	489	Right-handed 310
Helix 110	AM2	D	492	509	Right-handed alpha
Helix 111	AM3	D	509	517	Right-handed alpha
Helix 112	AM4	D	533	545	Right-handed alpha
Helix 113	AM5	D	564	579	Right-handed alpha
Helix 114	AM6	D	588	593	Right-handed alpha
Helix 115	AM7	D	601	619	Right-handed alpha
Helix 116	AM8	D	635	639	Right-handed 310
Helix 117	AM9	D	659	671	Right-handed alpha
Helix 118	AN1	D	681	688	Right-handed alpha
Helix 119	AN2	D	693	720	Right-handed alpha
Helix 120	AN3	D	754	763	Right-handed alpha
Helix 121	AN4	D	770	784	Right-handed alpha
Helix 122	AN5	E	212	216	Right-handed 310
Helix 123	AN6	E	219	236	Right-handed alpha
Helix 124	AN7	E	237	244	Right-handed alpha
Helix 125	AN8	E	260	272	Right-handed alpha
Helix 126	AN9	E	287	290	Right-handed 310
Helix 127	AO1	E	291	306	Right-handed alpha
Helix 128	AO2	E	329	343	Right-handed alpha
Helix 129	AO3	E	384	395	Right-handed alpha
Helix 130	AO4	E	408	413	Right-handed alpha
Helix 131	AO5	E	420	436	Right-handed alpha
Helix 132	AO6	E	458	467	Right-handed alpha
Helix 133	AO7	E	492	505	Right-handed alpha
Helix 134	AO8	E	533	543	Right-handed alpha
Helix 135	AO9	E	553	557	Right-handed 310
Helix 136	AP1	E	564	578	Right-handed alpha
Helix 137	AP2	E	588	593	Right-handed alpha
Helix 138	AP3	E	601	619	Right-handed alpha
Helix 139	AP4	E	635	639	Right-handed 310
Helix 140	AP5	E	660	671	Right-handed alpha
Helix 141	AP6	E	681	688	Right-handed alpha
Helix 142	AP7	E	693	713	Right-handed alpha
Helix 143	AP8	E	754	762	Right-handed alpha
Helix 144	AP9	F	219	236	Right-handed alpha
Helix 145	AQ1	F	237	244	Right-handed alpha
Helix 146	AQ2	F	260	272	Right-handed alpha
Helix 147	AQ3	F	291	307	Right-handed alpha
Helix 148	AQ4	F	329	344	Right-handed alpha
Helix 149	AQ5	F	364	369	Right-handed alpha
Helix 150	AQ6	F	384	396	Right-handed alpha
Helix 151	AQ7	F	405	413	Right-handed alpha
Helix 152	AQ8	F	418	437	Right-handed alpha
Helix 153	AQ9	F	448	454	Right-handed alpha
Helix 154	AR1	F	458	468	Right-handed alpha
Helix 155	AR2	F	485	489	Right-handed 310
Helix 156	AR3	F	492	509	Right-handed alpha
Helix 157	AR4	F	509	517	Right-handed alpha
Helix 158	AR5	F	533	545	Right-handed alpha
Helix 159	AR6	F	563	579	Right-handed alpha
Helix 160	AR7	F	588	593	Right-handed alpha
Helix 161	AR8	F	605	620	Right-handed alpha
Helix 162	AR9	F	635	639	Right-handed 310
Helix 163	AS1	F	640	645	Right-handed alpha
Helix 164	AS2	F	660	672	Right-handed alpha
Helix 165	AS3	F	682	689	Right-handed alpha
Helix 166	AS4	F	693	725	Right-handed alpha
Helix 167	AS5	F	754	763	Right-handed alpha
Helix 168	AS6	F	770	784	Right-handed alpha

There are 12 sheets in PDB entry 8UA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	280	first strand
Strand 2	A	310	314	parallel
Strand 3	A	352	356	parallel
Strand 4	A	251	254	parallel
Strand 5	A	375	378	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	552	first strand
Strand 2	A	582	587	parallel
Strand 3	A	627	633	parallel
Strand 4	A	523	527	parallel
Strand 5	A	651	654	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	280	first strand
Strand 2	B	309	314	parallel
Strand 3	B	351	357	parallel
Strand 4	B	250	254	parallel
Strand 5	B	375	378	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	582	587	parallel
Strand 3	B	627	633	parallel
Strand 4	B	524	527	parallel
Strand 5	B	651	654	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	279	first strand
Strand 2	C	310	314	parallel
Strand 3	C	352	357	parallel
Strand 4	C	250	254	parallel
Strand 5	C	375	378	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	552	first strand
Strand 2	C	582	587	parallel
Strand 3	C	627	633	parallel
Strand 4	C	523	527	parallel
Strand 5	C	651	654	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	279	first strand
Strand 2	D	309	313	parallel
Strand 3	D	351	357	parallel
Strand 4	D	251	254	parallel
Strand 5	D	375	378	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	552	first strand
Strand 2	D	582	587	parallel
Strand 3	D	627	633	parallel
Strand 4	D	524	527	parallel
Strand 5	D	651	654	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	280	first strand
Strand 2	E	310	314	parallel
Strand 3	E	352	356	parallel
Strand 4	E	250	254	parallel
Strand 5	E	375	378	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	552	first strand
Strand 2	E	582	587	parallel
Strand 3	E	628	632	parallel
Strand 4	E	524	527	parallel
Strand 5	E	651	654	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	280	first strand
Strand 2	F	310	314	parallel
Strand 3	F	352	356	parallel
Strand 4	F	251	254	parallel
Strand 5	F	376	378	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	548	552	first strand
Strand 2	F	582	587	parallel
Strand 3	F	627	633	parallel
Strand 4	F	523	527	parallel
Strand 5	F	652	654	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UA1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UA1