Analysis of interatomic Contacts of Structural Units in PDB entry:
8UA2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UA2 entry

There are 2 chains in PDB entry 8UA2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 640SER 763
B
 LEU 640SER 763
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8UA2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
689 699Right-handed alpha
Helix 2
AA2
A
701 706Right-handed alpha
Helix 3
AA3
A
752 756Right-handed 310
Helix 4
AA4
B
689 699Right-handed alpha
Helix 5
AA5
B
701 706Right-handed alpha
Helix 6
AA6
B
752 756Right-handed 310
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There are 5 sheets in PDB entry 8UA2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 646first strand
Strand 2
A
651 654anti-parallel
Strand 3
B
658 672anti-parallel
Strand 4
A
658 672anti-parallel
Strand 5
B
651 654anti-parallel
Strand 6
B
642 645anti-parallel
Strand 7
B
746 749anti-parallel
Strand 8
B
740 743anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 646first strand
Strand 2
A
651 654anti-parallel
Strand 3
B
658 672anti-parallel
Strand 4
B
680 684anti-parallel
Strand 5
A
678 684anti-parallel
Strand 6
A
658 672anti-parallel
Strand 7
B
651 654anti-parallel
Strand 8
B
642 645anti-parallel
Strand 9
B
746 749anti-parallel
Strand 10
B
740 743anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 716first strand
Strand 2
A
758 759anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
732 734first strand
Strand 2
A
738 743anti-parallel
Strand 3
A
746 749anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
715 717first strand
Strand 2
B
757 759anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il