Analysis of interatomic Contacts of Structural Units in PDB entry:
8UA3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UA3 entry

There are 3 chains in PDB entry 8UA3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 65SER 401
D
 SER 7PHE 128
E
 SER 7LYS 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8UA3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
72 76Right-handed 310
Helix 2
AA2
C
82 92Right-handed alpha
Helix 3
AA3
C
93 95Right-handed 310
Helix 4
AA4
C
128 139Right-handed alpha
Helix 5
AA5
C
204 209Right-handed alpha
Helix 6
AA6
C
231 244Right-handed alpha
Helix 7
AA7
C
298 311Right-handed alpha
Helix 8
AA8
C
339 349Right-handed alpha
Helix 9
AA9
D
15 30Right-handed alpha
Helix 10
AB1
D
48 56Right-handed alpha
Helix 11
AB2
D
80 94Right-handed alpha
Helix 12
AB3
D
101 112Right-handed alpha
Helix 13
AB4
E
15 29Right-handed alpha
Helix 14
AB5
E
51 56Right-handed alpha
Helix 15
AB6
E
57 64Right-handed alpha
Helix 16
AB7
E
84 94Right-handed alpha
Helix 17
AB8
E
102 114Right-handed alpha
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There are 8 sheets in PDB entry 8UA3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 71first strand
Strand 2
C
174 179anti-parallel
Strand 3
C
101 106anti-parallel
Strand 4
C
144 149parallel
Strand 5
C
257 261anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 168first strand
Strand 2
C
153 155anti-parallel
Strand 3
C
354 359anti-parallel
Strand 4
C
320 326parallel
Strand 5
C
392 397anti-parallel
Strand 6
C
291 292anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
274 277anti-parallel
Strand 3
C
223 225anti-parallel
Strand 4
C
254 255parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 220first strand
Strand 2
C
279 281anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 363first strand
Strand 2
C
387 388anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 374first strand
Strand 2
E
12 13anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 47first strand
Strand 2
D
36 40anti-parallel
Strand 3
D
72 75parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
36 40first strand
Strand 2
E
43 47anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il