Analysis of interatomic Contacts of Structural Units in PDB entry:
8UA5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UA5 entry

There are 2 chains in PDB entry 8UA5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 639SER 763
B
 GLY 639SER 763
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8UA5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
689 699Right-handed alpha
Helix 2
AA2
A
701 706Right-handed alpha
Helix 3
AA3
A
752 756Right-handed 310
Helix 4
AA4
B
689 699Right-handed alpha
Helix 5
AA5
B
701 706Right-handed alpha
Helix 6
AA6
B
730 734Right-handed 310
Helix 7
AA7
B
752 756Right-handed 310
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There are 4 sheets in PDB entry 8UA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
733 734first strand
Strand 2
A
738 743anti-parallel
Strand 3
A
746 749anti-parallel
Strand 4
A
642 646anti-parallel
Strand 5
A
651 654anti-parallel
Strand 6
B
658 672anti-parallel
Strand 7
A
658 672anti-parallel
Strand 8
B
651 654anti-parallel
Strand 9
B
641 645anti-parallel
Strand 10
B
746 749anti-parallel
Strand 11
B
740 743anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
733 734first strand
Strand 2
A
738 743anti-parallel
Strand 3
A
746 749anti-parallel
Strand 4
A
642 646anti-parallel
Strand 5
A
651 654anti-parallel
Strand 6
B
658 672anti-parallel
Strand 7
B
675 684anti-parallel
Strand 8
A
678 684anti-parallel
Strand 9
A
658 672anti-parallel
Strand 10
B
651 654anti-parallel
Strand 11
B
641 645anti-parallel
Strand 12
B
746 749anti-parallel
Strand 13
B
740 743anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 716first strand
Strand 2
A
758 759anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
715 717first strand
Strand 2
B
757 759anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il