Analysis of interatomic Contacts of Structural Units in PDB entry:
8UA6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UA6 entry

There are 5 chains in PDB entry 8UA6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASP 16SER 401
D
 SER 7PHE 128
E
 SER 7LYS 127
B
 PRO 2LEU 160
A
 LYS 13CYS 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 8UA6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
21 26Right-handed alpha
Helix 2
AA2
C
26 35Right-handed alpha
Helix 3
AA3
C
38 43Right-handed alpha
Helix 4
AA4
C
44 48Right-handed 310
Helix 5
AA5
C
49 60Right-handed alpha
Helix 6
AA6
C
72 76Right-handed 310
Helix 7
AA7
C
82 92Right-handed alpha
Helix 8
AA8
C
93 95Right-handed 310
Helix 9
AA9
C
128 139Right-handed alpha
Helix 10
AB1
C
204 209Right-handed alpha
Helix 11
AB2
C
231 244Right-handed alpha
Helix 12
AB3
C
298 311Right-handed alpha
Helix 13
AB4
C
339 349Right-handed alpha
Helix 14
AB5
D
15 30Right-handed alpha
Helix 15
AB6
D
48 56Right-handed alpha
Helix 16
AB7
D
80 94Right-handed alpha
Helix 17
AB8
D
101 112Right-handed alpha
Helix 18
AB9
E
15 29Right-handed alpha
Helix 19
AC1
E
51 56Right-handed alpha
Helix 20
AC2
E
57 64Right-handed alpha
Helix 21
AC3
E
84 94Right-handed alpha
Helix 22
AC4
E
102 114Right-handed alpha
Helix 23
AC5
B
17 22Right-handed alpha
Helix 24
AC6
B
24 33Right-handed alpha
Helix 25
AC7
B
51 65Right-handed alpha
Helix 26
AC8
B
86 94Right-handed alpha
Helix 27
AC9
B
96 111Right-handed alpha
Helix 28
AD1
B
112 128Right-handed alpha
Helix 29
AD2
B
132 134Right-handed 310
Helix 30
AD3
B
135 140Right-handed alpha
Helix 31
AD4
B
146 154Right-handed alpha
Helix 32
AD5
A
19 27Right-handed 310
Helix 33
AD6
A
38 54Right-handed alpha
Helix 34
AD7
A
86 95Right-handed alpha
Helix 35
AD8
A
95 100Right-handed alpha
Helix 36
AD9
A
123 128Right-handed alpha
Helix 37
AE1
A
129 132Right-handed 310
Helix 38
AE2
A
138 143Right-handed alpha
Helix 39
AE3
A
158 167Right-handed alpha
Helix 40
AE4
A
179 188Right-handed alpha
Helix 41
AE5
A
197 211Right-handed alpha
Helix 42
AE6
A
225 233Right-handed alpha
Helix 43
AE7
A
233 242Right-handed alpha
Helix 44
AE8
A
247 252Right-handed alpha
Helix 45
AE9
A
256 271Right-handed alpha
Helix 46
AF1
A
283 288Right-handed alpha
Helix 47
AF2
A
289 292Right-handed 310
Helix 48
AF3
A
303 313Right-handed alpha
Helix 49
AF4
A
317 329Right-handed alpha
Helix 50
AF5
A
337 355Right-handed alpha
Helix 51
AF6
A
357 361Right-handed 310
Helix 52
AF7
A
362 381Right-handed alpha
Helix 53
AF8
A
388 396Right-handed alpha
Helix 54
AF9
A
399 403Right-handed 310
Helix 55
AG1
A
416 430Right-handed alpha
Helix 56
AG2
A
438 454Right-handed alpha
Helix 57
AG3
A
459 477Right-handed alpha
Helix 58
AG4
A
481 495Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8UA6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 71first strand
Strand 2
C
174 179anti-parallel
Strand 3
C
101 106anti-parallel
Strand 4
C
144 149parallel
Strand 5
C
257 261anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 168first strand
Strand 2
C
153 155anti-parallel
Strand 3
C
354 359anti-parallel
Strand 4
C
320 326parallel
Strand 5
C
392 397anti-parallel
Strand 6
C
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
274 277anti-parallel
Strand 3
C
223 225anti-parallel
Strand 4
C
254 255parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 220first strand
Strand 2
C
279 281anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 363first strand
Strand 2
C
387 388anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 374first strand
Strand 2
E
12 13anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 47first strand
Strand 2
D
36 40anti-parallel
Strand 3
D
72 75parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
36 40first strand
Strand 2
E
43 47anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
4 7anti-parallel
Strand 3
B
45 46parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il