Analysis of interatomic Contacts of Structural Units in PDB entry:
8UAA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UAA entry

There are 7 chains in PDB entry 8UAA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 211	MET 784
B	VAL 211	PHE 796
C	VAL 211	PHE 796
D	VAL 211	ARG 788
E	TYR 213	SER 787
F	LYS 221	SER 768
G	ALA 1	ALA 22

There are152 helices in PDB entry 8UAA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	231	Right-handed alpha
Helix 2	AA2	A	231	236	Right-handed alpha
Helix 3	AA3	A	237	242	Right-handed alpha
Helix 4	AA4	A	260	272	Right-handed alpha
Helix 5	AA5	A	282	284	Right-handed 310
Helix 6	AA6	A	290	307	Right-handed alpha
Helix 7	AA7	A	316	319	Right-handed 310
Helix 8	AA8	A	329	344	Right-handed alpha
Helix 9	AA9	A	383	396	Right-handed alpha
Helix 10	AB1	A	405	413	Right-handed alpha
Helix 11	AB2	A	419	439	Right-handed alpha
Helix 12	AB3	A	448	454	Right-handed alpha
Helix 13	AB4	A	458	469	Right-handed alpha
Helix 14	AB5	A	472	476	Right-handed 310
Helix 15	AB6	A	492	509	Right-handed alpha
Helix 16	AB7	A	509	517	Right-handed alpha
Helix 17	AB8	A	533	544	Right-handed alpha
Helix 18	AB9	A	555	557	Right-handed 310
Helix 19	AC1	A	563	579	Right-handed alpha
Helix 20	AC2	A	605	620	Right-handed alpha
Helix 21	AC3	A	635	639	Right-handed 310
Helix 22	AC4	A	659	671	Right-handed alpha
Helix 23	AC5	A	682	689	Right-handed alpha
Helix 24	AC6	A	693	725	Right-handed alpha
Helix 25	AC7	A	754	762	Right-handed alpha
Helix 26	AC8	A	770	784	Right-handed alpha
Helix 27	AC9	B	220	236	Right-handed alpha
Helix 28	AD1	B	236	244	Right-handed alpha
Helix 29	AD2	B	260	272	Right-handed alpha
Helix 30	AD3	B	282	285	Right-handed 310
Helix 31	AD4	B	291	307	Right-handed alpha
Helix 32	AD5	B	315	319	Right-handed 310
Helix 33	AD6	B	328	343	Right-handed alpha
Helix 34	AD7	B	359	363	Right-handed 310
Helix 35	AD8	B	364	369	Right-handed 310
Helix 36	AD9	B	383	395	Right-handed alpha
Helix 37	AE1	B	405	413	Right-handed alpha
Helix 38	AE2	B	418	436	Right-handed alpha
Helix 39	AE3	B	448	453	Right-handed alpha
Helix 40	AE4	B	458	469	Right-handed alpha
Helix 41	AE5	B	472	478	Right-handed 310
Helix 42	AE6	B	492	509	Right-handed alpha
Helix 43	AE7	B	509	517	Right-handed alpha
Helix 44	AE8	B	533	545	Right-handed alpha
Helix 45	AE9	B	554	558	Right-handed 310
Helix 46	AF1	B	563	579	Right-handed alpha
Helix 47	AF2	B	588	593	Right-handed alpha
Helix 48	AF3	B	605	619	Right-handed alpha
Helix 49	AF4	B	659	671	Right-handed alpha
Helix 50	AF5	B	682	689	Right-handed alpha
Helix 51	AF6	B	693	722	Right-handed alpha
Helix 52	AF7	B	754	762	Right-handed alpha
Helix 53	AF8	B	770	788	Right-handed alpha
Helix 54	AF9	C	219	236	Right-handed alpha
Helix 55	AG1	C	237	244	Right-handed alpha
Helix 56	AG2	C	260	272	Right-handed alpha
Helix 57	AG3	C	281	285	Right-handed 310
Helix 58	AG4	C	291	306	Right-handed alpha
Helix 59	AG5	C	315	320	Right-handed alpha
Helix 60	AG6	C	329	343	Right-handed alpha
Helix 61	AG7	C	364	368	Right-handed 310
Helix 62	AG8	C	383	395	Right-handed alpha
Helix 63	AG9	C	405	413	Right-handed alpha
Helix 64	AH1	C	418	439	Right-handed alpha
Helix 65	AH2	C	448	454	Right-handed alpha
Helix 66	AH3	C	458	469	Right-handed alpha
Helix 67	AH4	C	472	476	Right-handed 310
Helix 68	AH5	C	492	509	Right-handed alpha
Helix 69	AH6	C	509	517	Right-handed alpha
Helix 70	AH7	C	533	545	Right-handed alpha
Helix 71	AH8	C	563	579	Right-handed alpha
Helix 72	AH9	C	605	619	Right-handed alpha
Helix 73	AI1	C	635	639	Right-handed 310
Helix 74	AI2	C	659	671	Right-handed alpha
Helix 75	AI3	C	682	690	Right-handed alpha
Helix 76	AI4	C	693	722	Right-handed alpha
Helix 77	AI5	C	754	762	Right-handed alpha
Helix 78	AI6	C	770	789	Right-handed alpha
Helix 79	AI7	D	220	236	Right-handed alpha
Helix 80	AI8	D	237	244	Right-handed alpha
Helix 81	AI9	D	260	272	Right-handed alpha
Helix 82	AJ1	D	281	285	Right-handed 310
Helix 83	AJ2	D	291	306	Right-handed alpha
Helix 84	AJ3	D	315	320	Right-handed alpha
Helix 85	AJ4	D	329	343	Right-handed alpha
Helix 86	AJ5	D	359	363	Right-handed 310
Helix 87	AJ6	D	364	368	Right-handed 310
Helix 88	AJ7	D	383	395	Right-handed alpha
Helix 89	AJ8	D	405	413	Right-handed alpha
Helix 90	AJ9	D	418	440	Right-handed alpha
Helix 91	AK1	D	450	454	Right-handed alpha
Helix 92	AK2	D	458	469	Right-handed alpha
Helix 93	AK3	D	471	475	Right-handed 310
Helix 94	AK4	D	485	489	Right-handed 310
Helix 95	AK5	D	492	509	Right-handed alpha
Helix 96	AK6	D	509	517	Right-handed alpha
Helix 97	AK7	D	533	545	Right-handed alpha
Helix 98	AK8	D	564	579	Right-handed alpha
Helix 99	AK9	D	588	593	Right-handed alpha
Helix 100	AL1	D	601	619	Right-handed alpha
Helix 101	AL2	D	635	639	Right-handed 310
Helix 102	AL3	D	659	671	Right-handed alpha
Helix 103	AL4	D	682	688	Right-handed alpha
Helix 104	AL5	D	693	722	Right-handed alpha
Helix 105	AL6	D	754	763	Right-handed alpha
Helix 106	AL7	D	770	788	Right-handed alpha
Helix 107	AL8	E	219	236	Right-handed alpha
Helix 108	AL9	E	237	244	Right-handed alpha
Helix 109	AM1	E	260	272	Right-handed alpha
Helix 110	AM2	E	280	285	Right-handed alpha
Helix 111	AM3	E	291	306	Right-handed alpha
Helix 112	AM4	E	328	343	Right-handed alpha
Helix 113	AM5	E	384	395	Right-handed alpha
Helix 114	AM6	E	405	413	Right-handed alpha
Helix 115	AM7	E	418	436	Right-handed alpha
Helix 116	AM8	E	458	468	Right-handed alpha
Helix 117	AM9	E	492	509	Right-handed alpha
Helix 118	AN1	E	509	517	Right-handed alpha
Helix 119	AN2	E	533	543	Right-handed alpha
Helix 120	AN3	E	563	578	Right-handed alpha
Helix 121	AN4	E	588	593	Right-handed alpha
Helix 122	AN5	E	601	619	Right-handed alpha
Helix 123	AN6	E	635	639	Right-handed 310
Helix 124	AN7	E	659	671	Right-handed alpha
Helix 125	AN8	E	681	688	Right-handed alpha
Helix 126	AN9	E	693	713	Right-handed alpha
Helix 127	AO1	E	754	762	Right-handed alpha
Helix 128	AO2	E	771	787	Right-handed alpha
Helix 129	AO3	F	222	236	Right-handed alpha
Helix 130	AO4	F	236	244	Right-handed alpha
Helix 131	AO5	F	261	272	Right-handed alpha
Helix 132	AO6	F	282	285	Right-handed 310
Helix 133	AO7	F	290	307	Right-handed alpha
Helix 134	AO8	F	315	320	Right-handed alpha
Helix 135	AO9	F	329	343	Right-handed alpha
Helix 136	AP1	F	384	395	Right-handed alpha
Helix 137	AP2	F	396	398	Right-handed 310
Helix 138	AP3	F	405	413	Right-handed alpha
Helix 139	AP4	F	419	436	Right-handed alpha
Helix 140	AP5	F	458	468	Right-handed alpha
Helix 141	AP6	F	494	508	Right-handed alpha
Helix 142	AP7	F	510	515	Right-handed alpha
Helix 143	AP8	F	533	544	Right-handed alpha
Helix 144	AP9	F	554	558	Right-handed 310
Helix 145	AQ1	F	563	579	Right-handed alpha
Helix 146	AQ2	F	588	594	Right-handed alpha
Helix 147	AQ3	F	601	619	Right-handed alpha
Helix 148	AQ4	F	660	671	Right-handed alpha
Helix 149	AQ5	F	682	689	Right-handed alpha
Helix 150	AQ6	F	693	714	Right-handed alpha
Helix 151	AQ7	F	754	762	Right-handed alpha
Helix 152	AQ8	F	763	765	Right-handed 310

There are 12 sheets in PDB entry 8UAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	280	first strand
Strand 2	A	310	314	parallel
Strand 3	A	352	356	parallel
Strand 4	A	251	254	parallel
Strand 5	A	376	378	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	582	587	parallel
Strand 3	A	627	633	parallel
Strand 4	A	523	527	parallel
Strand 5	A	651	654	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	280	first strand
Strand 2	B	309	314	parallel
Strand 3	B	351	357	parallel
Strand 4	B	250	254	parallel
Strand 5	B	375	378	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	582	587	parallel
Strand 3	B	627	633	parallel
Strand 4	B	524	527	parallel
Strand 5	B	651	654	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	279	first strand
Strand 2	C	310	314	parallel
Strand 3	C	352	357	parallel
Strand 4	C	250	254	parallel
Strand 5	C	375	378	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	552	first strand
Strand 2	C	582	587	parallel
Strand 3	C	627	633	parallel
Strand 4	C	524	527	parallel
Strand 5	C	651	654	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	351	357	parallel
Strand 3	D	309	314	parallel
Strand 4	D	275	279	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	552	first strand
Strand 2	D	582	587	parallel
Strand 3	D	627	633	parallel
Strand 4	D	524	527	parallel
Strand 5	D	651	654	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	279	first strand
Strand 2	E	310	314	parallel
Strand 3	E	352	357	parallel
Strand 4	E	250	254	parallel
Strand 5	E	375	378	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	552	first strand
Strand 2	E	582	587	parallel
Strand 3	E	628	632	parallel
Strand 4	E	524	527	parallel
Strand 5	E	651	654	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	280	first strand
Strand 2	F	310	314	parallel
Strand 3	F	352	356	parallel
Strand 4	F	250	254	parallel
Strand 5	F	375	378	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	552	first strand
Strand 2	F	583	587	parallel
Strand 3	F	628	633	parallel
Strand 4	F	524	527	parallel
Strand 5	F	653	654	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UAA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UAA