Analysis of interatomic Contacts of Structural Units in PDB entry:
8UAD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UAD entry

There are 6 chains in PDB entry 8UAD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ARG 344
B	GLY 1	THR 166
C	ASP 1	ARG 344
D	GLY 1	THR 166
E	ASP 1	ARG 344
F	GLY 1	THR 166

There are 39 helices in PDB entry 8UAD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	68	Right-handed alpha
Helix 2	AA2	A	98	102	Right-handed 310
Helix 3	AA3	A	103	105	Right-handed 310
Helix 4	AA4	A	106	112	Right-handed alpha
Helix 5	AA5	A	126	130	Right-handed 310
Helix 6	AA6	A	194	202	Right-handed alpha
Helix 7	AA7	A	338	343	Right-handed alpha
Helix 8	AA8	B	2	8	Right-handed alpha
Helix 9	AA9	B	37	57	Right-handed alpha
Helix 10	AB1	B	74	110	Right-handed alpha
Helix 11	AB2	B	112	127	Right-handed alpha
Helix 12	AB3	B	145	154	Right-handed alpha
Helix 13	AB4	B	158	163	Right-handed 310
Helix 14	AB5	C	61	68	Right-handed alpha
Helix 15	AB6	C	98	102	Right-handed 310
Helix 16	AB7	C	103	105	Right-handed 310
Helix 17	AB8	C	106	112	Right-handed alpha
Helix 18	AB9	C	126	130	Right-handed 310
Helix 19	AC1	C	194	202	Right-handed alpha
Helix 20	AC2	C	338	343	Right-handed alpha
Helix 21	AC3	D	2	8	Right-handed alpha
Helix 22	AC4	D	37	57	Right-handed alpha
Helix 23	AC5	D	74	110	Right-handed alpha
Helix 24	AC6	D	112	127	Right-handed alpha
Helix 25	AC7	D	145	154	Right-handed alpha
Helix 26	AC8	D	158	163	Right-handed 310
Helix 27	AC9	E	61	68	Right-handed alpha
Helix 28	AD1	E	98	102	Right-handed 310
Helix 29	AD2	E	103	105	Right-handed 310
Helix 30	AD3	E	106	112	Right-handed alpha
Helix 31	AD4	E	126	130	Right-handed 310
Helix 32	AD5	E	194	202	Right-handed alpha
Helix 33	AD6	E	338	343	Right-handed alpha
Helix 34	AD7	F	2	8	Right-handed alpha
Helix 35	AD8	F	37	57	Right-handed alpha
Helix 36	AD9	F	74	110	Right-handed alpha
Helix 37	AE1	F	112	127	Right-handed alpha
Helix 38	AE2	F	145	154	Right-handed alpha
Helix 39	AE3	F	158	163	Right-handed 310

There are 30 sheets in PDB entry 8UAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	137	139	anti-parallel
Strand 5	B	131	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	23	26	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	327	329	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	289	290	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	81	84	parallel
Strand 3	A	278	281	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	271	274	anti-parallel
Strand 3	A	183	192	anti-parallel
Strand 4	A	264	267	anti-parallel
Strand 5	A	156	161	anti-parallel
Strand 6	A	135	137	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	271	274	anti-parallel
Strand 3	A	183	192	anti-parallel
Strand 4	A	242	250	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	174	first strand
Strand 2	A	256	260	anti-parallel
Strand 3	A	209	214	anti-parallel
Strand 4	A	217	222	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	292	294	anti-parallel
Strand 3	A	314	316	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	320	321	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	137	139	anti-parallel
Strand 5	D	131	132	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	23	26	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	327	329	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	289	290	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	81	84	parallel
Strand 3	C	278	281	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	271	274	anti-parallel
Strand 3	C	183	192	anti-parallel
Strand 4	C	264	267	anti-parallel
Strand 5	C	156	161	anti-parallel
Strand 6	C	135	137	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	271	274	anti-parallel
Strand 3	C	183	192	anti-parallel
Strand 4	C	242	250	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	174	first strand
Strand 2	C	256	260	anti-parallel
Strand 3	C	209	214	anti-parallel
Strand 4	C	217	222	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	314	316	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	320	321	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	137	139	anti-parallel
Strand 5	F	131	132	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	23	26	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	327	329	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	289	290	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	81	84	parallel
Strand 3	E	278	281	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	271	274	anti-parallel
Strand 3	E	183	192	anti-parallel
Strand 4	E	264	267	anti-parallel
Strand 5	E	156	161	anti-parallel
Strand 6	E	135	137	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	271	274	anti-parallel
Strand 3	E	183	192	anti-parallel
Strand 4	E	242	250	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	174	first strand
Strand 2	E	256	260	anti-parallel
Strand 3	E	209	214	anti-parallel
Strand 4	E	217	222	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	300	first strand
Strand 2	E	292	294	anti-parallel
Strand 3	E	314	316	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	307	first strand
Strand 2	E	320	321	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UAD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UAD