Analysis of interatomic Contacts of Structural Units in PDB entry:
8UAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UAG entry

There is 1 chain in PDB entry 8UAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1THR 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8UAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 37Right-handed alpha
Helix 2
AA2
A
84 88Right-handed 310
Helix 3
AA3
A
89 116Right-handed alpha
Helix 4
AA4
A
128 145Right-handed alpha
Helix 5
AA5
A
157 168Right-handed alpha
Helix 6
AA6
A
177 184Right-handed alpha
Helix 7
AA7
A
201 212Right-handed alpha
Helix 8
AA8
A
216 218Right-handed 310
Helix 9
AA9
A
239 244Right-handed alpha
Helix 10
AB1
A
256 260Right-handed 310
Helix 11
AB2
A
261 265Right-handed 310
Helix 12
AB3
A
275 279Right-handed 310
Helix 13
AB4
A
290 293Right-handed 310
Helix 14
AB5
A
294 307Right-handed alpha
Helix 15
AB6
A
321 334Right-handed alpha
Helix 16
AB7
A
348 359Right-handed alpha
Helix 17
AB8
A
372 381Right-handed alpha
Helix 18
AB9
A
392 397Right-handed alpha
Helix 19
AC1
A
409 427Right-handed alpha
Helix 20
AC2
A
428 446Right-handed alpha
Helix 21
AC3
A
446 462Right-handed alpha
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There are 2 sheets in PDB entry 8UAG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
42 50parallel
Strand 3
A
5 10parallel
Strand 4
A
121 125parallel
Strand 5
A
151 155parallel
Strand 6
A
196 199parallel
Strand 7
A
220 222parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
312 317parallel
Strand 3
A
281 286parallel
Strand 4
A
361 364parallel
Strand 5
A
385 388parallel
Strand 6
A
402 405parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il