Analysis of interatomic Contacts of Structural Units in PDB entry:
8UAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UAV entry

There are 10 chains in PDB entry 8UAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 231
B	MET 1	ALA 231
C	MET 1	ALA 231
D	MET 1	ALA 231
E	MET 1	ALA 231
F	MET 1	ALA 231
G	MET 1	ALA 231
H	MET 1	ALA 231
I	MET 1	ALA 231
J	MET 1	ALA 231

There are 60 helices in PDB entry 8UAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	49	Right-handed alpha
Helix 2	AA2	A	96	116	Right-handed alpha
Helix 3	AA3	A	128	130	Right-handed 310
Helix 4	AA4	A	131	141	Right-handed alpha
Helix 5	AA5	A	162	181	Right-handed alpha
Helix 6	AA6	A	197	230	Right-handed alpha
Helix 7	AA7	B	35	49	Right-handed alpha
Helix 8	AA8	B	96	116	Right-handed alpha
Helix 9	AA9	B	128	130	Right-handed 310
Helix 10	AB1	B	131	141	Right-handed alpha
Helix 11	AB2	B	162	181	Right-handed alpha
Helix 12	AB3	B	197	230	Right-handed alpha
Helix 13	AB4	C	35	49	Right-handed alpha
Helix 14	AB5	C	96	116	Right-handed alpha
Helix 15	AB6	C	128	130	Right-handed 310
Helix 16	AB7	C	131	141	Right-handed alpha
Helix 17	AB8	C	162	181	Right-handed alpha
Helix 18	AB9	C	197	230	Right-handed alpha
Helix 19	AC1	D	35	49	Right-handed alpha
Helix 20	AC2	D	96	116	Right-handed alpha
Helix 21	AC3	D	128	130	Right-handed 310
Helix 22	AC4	D	131	141	Right-handed alpha
Helix 23	AC5	D	162	181	Right-handed alpha
Helix 24	AC6	D	197	230	Right-handed alpha
Helix 25	AC7	E	35	49	Right-handed alpha
Helix 26	AC8	E	96	116	Right-handed alpha
Helix 27	AC9	E	128	130	Right-handed 310
Helix 28	AD1	E	131	141	Right-handed alpha
Helix 29	AD2	E	162	181	Right-handed alpha
Helix 30	AD3	E	197	230	Right-handed alpha
Helix 31	AD4	F	35	49	Right-handed alpha
Helix 32	AD5	F	96	116	Right-handed alpha
Helix 33	AD6	F	128	130	Right-handed 310
Helix 34	AD7	F	131	141	Right-handed alpha
Helix 35	AD8	F	162	181	Right-handed alpha
Helix 36	AD9	F	197	230	Right-handed alpha
Helix 37	AE1	G	35	49	Right-handed alpha
Helix 38	AE2	G	96	116	Right-handed alpha
Helix 39	AE3	G	128	130	Right-handed 310
Helix 40	AE4	G	131	141	Right-handed alpha
Helix 41	AE5	G	162	181	Right-handed alpha
Helix 42	AE6	G	197	230	Right-handed alpha
Helix 43	AE7	H	35	49	Right-handed alpha
Helix 44	AE8	H	96	116	Right-handed alpha
Helix 45	AE9	H	128	130	Right-handed 310
Helix 46	AF1	H	131	141	Right-handed alpha
Helix 47	AF2	H	162	181	Right-handed alpha
Helix 48	AF3	H	197	230	Right-handed alpha
Helix 49	AF4	I	35	49	Right-handed alpha
Helix 50	AF5	I	96	116	Right-handed alpha
Helix 51	AF6	I	128	130	Right-handed 310
Helix 52	AF7	I	131	141	Right-handed alpha
Helix 53	AF8	I	162	181	Right-handed alpha
Helix 54	AF9	I	197	230	Right-handed alpha
Helix 55	AG1	J	35	49	Right-handed alpha
Helix 56	AG2	J	96	116	Right-handed alpha
Helix 57	AG3	J	128	130	Right-handed 310
Helix 58	AG4	J	131	141	Right-handed alpha
Helix 59	AG5	J	162	181	Right-handed alpha
Helix 60	AG6	J	197	230	Right-handed alpha

There are 30 sheets in PDB entry 8UAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	52	55	anti-parallel
Strand 3	A	68	69	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	16	first strand
Strand 2	A	22	26	anti-parallel
Strand 3	A	29	33	anti-parallel
Strand 4	A	63	64	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	126	first strand
Strand 2	A	87	93	parallel
Strand 3	A	147	153	parallel
Strand 4	A	184	189	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	52	55	anti-parallel
Strand 3	B	68	69	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	16	first strand
Strand 2	B	22	26	anti-parallel
Strand 3	B	29	33	anti-parallel
Strand 4	B	63	64	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	126	first strand
Strand 2	B	87	93	parallel
Strand 3	B	147	153	parallel
Strand 4	B	184	189	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	9	first strand
Strand 2	C	52	54	anti-parallel
Strand 3	C	68	69	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	16	first strand
Strand 2	C	22	26	anti-parallel
Strand 3	C	29	33	anti-parallel
Strand 4	C	63	64	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	126	first strand
Strand 2	C	87	93	parallel
Strand 3	C	147	153	parallel
Strand 4	C	184	189	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	52	54	anti-parallel
Strand 3	D	68	69	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	16	first strand
Strand 2	D	22	26	anti-parallel
Strand 3	D	29	33	anti-parallel
Strand 4	D	63	64	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	126	first strand
Strand 2	D	87	93	parallel
Strand 3	D	147	153	parallel
Strand 4	D	184	189	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	9	first strand
Strand 2	E	52	54	anti-parallel
Strand 3	E	68	69	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	16	first strand
Strand 2	E	22	26	anti-parallel
Strand 3	E	29	33	anti-parallel
Strand 4	E	63	64	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	126	first strand
Strand 2	E	87	93	parallel
Strand 3	E	147	153	parallel
Strand 4	E	184	189	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	52	55	anti-parallel
Strand 3	F	68	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	16	first strand
Strand 2	F	22	26	anti-parallel
Strand 3	F	29	33	anti-parallel
Strand 4	F	63	64	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	126	first strand
Strand 2	F	87	93	parallel
Strand 3	F	147	153	parallel
Strand 4	F	184	189	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	9	first strand
Strand 2	G	52	54	anti-parallel
Strand 3	G	68	69	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	16	first strand
Strand 2	G	22	26	anti-parallel
Strand 3	G	29	33	anti-parallel
Strand 4	G	63	64	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	126	first strand
Strand 2	G	87	93	parallel
Strand 3	G	147	153	parallel
Strand 4	G	184	189	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	9	first strand
Strand 2	H	52	54	anti-parallel
Strand 3	H	68	69	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	16	first strand
Strand 2	H	22	26	anti-parallel
Strand 3	H	29	33	anti-parallel
Strand 4	H	63	64	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	126	first strand
Strand 2	H	87	93	parallel
Strand 3	H	147	153	parallel
Strand 4	H	184	189	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	9	first strand
Strand 2	I	52	54	anti-parallel
Strand 3	I	68	69	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	16	first strand
Strand 2	I	22	26	anti-parallel
Strand 3	I	29	33	anti-parallel
Strand 4	I	63	64	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	126	first strand
Strand 2	I	87	93	parallel
Strand 3	I	147	153	parallel
Strand 4	I	184	189	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	7	9	first strand
Strand 2	J	52	54	anti-parallel
Strand 3	J	68	69	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	16	first strand
Strand 2	J	22	26	anti-parallel
Strand 3	J	29	33	anti-parallel
Strand 4	J	63	64	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	126	first strand
Strand 2	J	87	93	parallel
Strand 3	J	147	153	parallel
Strand 4	J	184	189	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UAV