Analysis of interatomic Contacts of Structural Units in PDB entry:
8UB4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UB4 entry

There are 10 chains in PDB entry 8UB4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 211	MET 784
B	VAL 211	PHE 796
C	VAL 211	ARG 788
D	VAL 211	PHE 796
E	VAL 211	LYS 785
F	CYS 219	ARG 767
G	ALA 1	ALA 22
H	ARG 1	ASP 15
I	ARG 1	ASP 15
J	ARG 1	GLN 12

There are169 helices in PDB entry 8UB4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	212	216	Right-handed 310
Helix 2	AA2	A	219	231	Right-handed alpha
Helix 3	AA3	A	231	236	Right-handed alpha
Helix 4	AA4	A	237	244	Right-handed alpha
Helix 5	AA5	A	260	272	Right-handed alpha
Helix 6	AA6	A	282	284	Right-handed 310
Helix 7	AA7	A	291	307	Right-handed alpha
Helix 8	AA8	A	316	320	Right-handed 310
Helix 9	AA9	A	322	326	Right-handed 310
Helix 10	AB1	A	329	344	Right-handed alpha
Helix 11	AB2	A	359	363	Right-handed 310
Helix 12	AB3	A	364	369	Right-handed 310
Helix 13	AB4	A	383	396	Right-handed alpha
Helix 14	AB5	A	405	413	Right-handed alpha
Helix 15	AB6	A	418	436	Right-handed alpha
Helix 16	AB7	A	450	454	Right-handed alpha
Helix 17	AB8	A	458	468	Right-handed alpha
Helix 18	AB9	A	471	475	Right-handed 310
Helix 19	AC1	A	492	509	Right-handed alpha
Helix 20	AC2	A	509	517	Right-handed alpha
Helix 21	AC3	A	533	544	Right-handed alpha
Helix 22	AC4	A	554	558	Right-handed alpha
Helix 23	AC5	A	563	579	Right-handed alpha
Helix 24	AC6	A	605	619	Right-handed alpha
Helix 25	AC7	A	640	645	Right-handed alpha
Helix 26	AC8	A	659	671	Right-handed alpha
Helix 27	AC9	A	682	689	Right-handed alpha
Helix 28	AD1	A	693	724	Right-handed alpha
Helix 29	AD2	A	754	762	Right-handed alpha
Helix 30	AD3	A	763	765	Right-handed 310
Helix 31	AD4	A	770	784	Right-handed alpha
Helix 32	AD5	B	212	216	Right-handed 310
Helix 33	AD6	B	219	236	Right-handed alpha
Helix 34	AD7	B	236	244	Right-handed alpha
Helix 35	AD8	B	260	272	Right-handed alpha
Helix 36	AD9	B	282	285	Right-handed 310
Helix 37	AE1	B	291	307	Right-handed alpha
Helix 38	AE2	B	316	320	Right-handed 310
Helix 39	AE3	B	329	343	Right-handed alpha
Helix 40	AE4	B	359	363	Right-handed 310
Helix 41	AE5	B	364	369	Right-handed 310
Helix 42	AE6	B	383	395	Right-handed alpha
Helix 43	AE7	B	405	413	Right-handed alpha
Helix 44	AE8	B	418	434	Right-handed alpha
Helix 45	AE9	B	448	453	Right-handed alpha
Helix 46	AF1	B	458	468	Right-handed alpha
Helix 47	AF2	B	471	475	Right-handed 310
Helix 48	AF3	B	485	489	Right-handed 310
Helix 49	AF4	B	492	509	Right-handed alpha
Helix 50	AF5	B	509	517	Right-handed alpha
Helix 51	AF6	B	533	545	Right-handed alpha
Helix 52	AF7	B	554	558	Right-handed 310
Helix 53	AF8	B	563	579	Right-handed alpha
Helix 54	AF9	B	605	619	Right-handed alpha
Helix 55	AG1	B	640	645	Right-handed 310
Helix 56	AG2	B	659	671	Right-handed alpha
Helix 57	AG3	B	682	690	Right-handed alpha
Helix 58	AG4	B	693	722	Right-handed alpha
Helix 59	AG5	B	754	760	Right-handed alpha
Helix 60	AG6	B	770	786	Right-handed alpha
Helix 61	AG7	B	787	789	Right-handed 310
Helix 62	AG8	C	212	216	Right-handed 310
Helix 63	AG9	C	219	236	Right-handed alpha
Helix 64	AH1	C	237	244	Right-handed alpha
Helix 65	AH2	C	260	272	Right-handed alpha
Helix 66	AH3	C	280	284	Right-handed 310
Helix 67	AH4	C	291	307	Right-handed alpha
Helix 68	AH5	C	316	320	Right-handed 310
Helix 69	AH6	C	329	343	Right-handed alpha
Helix 70	AH7	C	364	368	Right-handed 310
Helix 71	AH8	C	383	395	Right-handed alpha
Helix 72	AH9	C	405	413	Right-handed alpha
Helix 73	AI1	C	418	440	Right-handed alpha
Helix 74	AI2	C	448	453	Right-handed alpha
Helix 75	AI3	C	458	468	Right-handed alpha
Helix 76	AI4	C	471	475	Right-handed 310
Helix 77	AI5	C	492	509	Right-handed alpha
Helix 78	AI6	C	509	517	Right-handed alpha
Helix 79	AI7	C	533	545	Right-handed alpha
Helix 80	AI8	C	563	579	Right-handed alpha
Helix 81	AI9	C	588	593	Right-handed alpha
Helix 82	AJ1	C	606	619	Right-handed alpha
Helix 83	AJ2	C	635	639	Right-handed 310
Helix 84	AJ3	C	659	671	Right-handed alpha
Helix 85	AJ4	C	682	690	Right-handed alpha
Helix 86	AJ5	C	693	722	Right-handed alpha
Helix 87	AJ6	C	754	762	Right-handed alpha
Helix 88	AJ7	C	770	787	Right-handed alpha
Helix 89	AJ8	D	212	216	Right-handed 310
Helix 90	AJ9	D	219	236	Right-handed alpha
Helix 91	AK1	D	237	244	Right-handed alpha
Helix 92	AK2	D	260	272	Right-handed alpha
Helix 93	AK3	D	282	285	Right-handed 310
Helix 94	AK4	D	291	306	Right-handed alpha
Helix 95	AK5	D	316	320	Right-handed 310
Helix 96	AK6	D	328	343	Right-handed alpha
Helix 97	AK7	D	359	363	Right-handed 310
Helix 98	AK8	D	364	368	Right-handed 310
Helix 99	AK9	D	383	395	Right-handed alpha
Helix 100	AL1	D	406	413	Right-handed alpha
Helix 101	AL2	D	418	436	Right-handed alpha
Helix 102	AL3	D	449	453	Right-handed alpha
Helix 103	AL4	D	458	468	Right-handed alpha
Helix 104	AL5	D	471	476	Right-handed 310
Helix 105	AL6	D	485	489	Right-handed 310
Helix 106	AL7	D	492	509	Right-handed alpha
Helix 107	AL8	D	509	517	Right-handed alpha
Helix 108	AL9	D	533	544	Right-handed alpha
Helix 109	AM1	D	564	579	Right-handed alpha
Helix 110	AM2	D	588	593	Right-handed alpha
Helix 111	AM3	D	594	597	Right-handed 310
Helix 112	AM4	D	601	619	Right-handed alpha
Helix 113	AM5	D	635	639	Right-handed 310
Helix 114	AM6	D	659	671	Right-handed alpha
Helix 115	AM7	D	681	688	Right-handed alpha
Helix 116	AM8	D	693	722	Right-handed alpha
Helix 117	AM9	D	754	763	Right-handed alpha
Helix 118	AN1	D	770	787	Right-handed alpha
Helix 119	AN2	E	212	216	Right-handed 310
Helix 120	AN3	E	219	236	Right-handed alpha
Helix 121	AN4	E	236	244	Right-handed alpha
Helix 122	AN5	E	260	272	Right-handed alpha
Helix 123	AN6	E	281	285	Right-handed alpha
Helix 124	AN7	E	291	306	Right-handed alpha
Helix 125	AN8	E	316	320	Right-handed 310
Helix 126	AN9	E	329	343	Right-handed alpha
Helix 127	AO1	E	383	398	Right-handed alpha
Helix 128	AO2	E	405	413	Right-handed alpha
Helix 129	AO3	E	418	436	Right-handed alpha
Helix 130	AO4	E	458	468	Right-handed alpha
Helix 131	AO5	E	492	509	Right-handed alpha
Helix 132	AO6	E	509	517	Right-handed alpha
Helix 133	AO7	E	533	545	Right-handed alpha
Helix 134	AO8	E	555	558	Right-handed 310
Helix 135	AO9	E	563	579	Right-handed alpha
Helix 136	AP1	E	588	593	Right-handed alpha
Helix 137	AP2	E	601	619	Right-handed alpha
Helix 138	AP3	E	635	639	Right-handed 310
Helix 139	AP4	E	659	671	Right-handed alpha
Helix 140	AP5	E	683	687	Right-handed alpha
Helix 141	AP6	E	693	711	Right-handed alpha
Helix 142	AP7	E	754	762	Right-handed alpha
Helix 143	AP8	E	770	785	Right-handed alpha
Helix 144	AP9	F	220	236	Right-handed alpha
Helix 145	AQ1	F	236	244	Right-handed alpha
Helix 146	AQ2	F	260	272	Right-handed alpha
Helix 147	AQ3	F	290	307	Right-handed alpha
Helix 148	AQ4	F	315	319	Right-handed 310
Helix 149	AQ5	F	329	344	Right-handed alpha
Helix 150	AQ6	F	384	396	Right-handed alpha
Helix 151	AQ7	F	405	413	Right-handed alpha
Helix 152	AQ8	F	418	436	Right-handed alpha
Helix 153	AQ9	F	458	468	Right-handed alpha
Helix 154	AR1	F	492	508	Right-handed alpha
Helix 155	AR2	F	533	544	Right-handed alpha
Helix 156	AR3	F	563	566	Right-handed 310
Helix 157	AR4	F	567	579	Right-handed alpha
Helix 158	AR5	F	588	594	Right-handed alpha
Helix 159	AR6	F	601	619	Right-handed alpha
Helix 160	AR7	F	623	627	Right-handed 310
Helix 161	AR8	F	635	639	Right-handed 310
Helix 162	AR9	F	660	671	Right-handed alpha
Helix 163	AS1	F	682	689	Right-handed alpha
Helix 164	AS2	F	693	725	Right-handed alpha
Helix 165	AS3	F	754	762	Right-handed alpha
Helix 166	AS4	F	763	765	Right-handed 310
Helix 167	AS5	H	5	15	Right-handed alpha
Helix 168	AS6	I	5	15	Right-handed alpha
Helix 169	AS7	J	5	12	Right-handed alpha

There are 12 sheets in PDB entry 8UB4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	280	first strand
Strand 2	A	310	314	parallel
Strand 3	A	352	356	parallel
Strand 4	A	251	254	parallel
Strand 5	A	375	378	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	582	587	parallel
Strand 3	A	627	633	parallel
Strand 4	A	523	527	parallel
Strand 5	A	651	654	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	378	first strand
Strand 2	B	250	254	parallel
Strand 3	B	351	357	parallel
Strand 4	B	309	314	parallel
Strand 5	B	275	280	parallel
Strand 6	H	2	4	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	582	587	parallel
Strand 3	B	627	633	parallel
Strand 4	B	524	527	parallel
Strand 5	B	651	654	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	378	first strand
Strand 2	C	250	254	parallel
Strand 3	C	352	357	parallel
Strand 4	C	309	314	parallel
Strand 5	C	275	279	parallel
Strand 6	I	2	4	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	552	first strand
Strand 2	C	582	587	parallel
Strand 3	C	627	633	parallel
Strand 4	C	524	527	parallel
Strand 5	C	651	654	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	351	357	parallel
Strand 3	D	309	314	parallel
Strand 4	D	275	280	parallel
Strand 5	J	2	4	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	552	first strand
Strand 2	D	582	587	parallel
Strand 3	D	627	633	parallel
Strand 4	D	524	527	parallel
Strand 5	D	651	654	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	251	254	first strand
Strand 2	E	351	357	parallel
Strand 3	E	309	314	parallel
Strand 4	E	275	280	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	553	first strand
Strand 2	E	582	587	parallel
Strand 3	E	628	633	parallel
Strand 4	E	524	527	parallel
Strand 5	E	651	654	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	280	first strand
Strand 2	F	310	314	parallel
Strand 3	F	352	356	parallel
Strand 4	F	250	254	parallel
Strand 5	F	375	378	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	552	first strand
Strand 2	F	584	587	parallel
Strand 3	F	629	633	parallel
Strand 4	F	524	527	parallel
Strand 5	F	653	654	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UB4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UB4