Analysis of interatomic Contacts of Structural Units in PDB entry:
8UB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UB8 entry

There are 9 chains in PDB entry 8UB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 328
B
 MET 1ARG 122
C
 CYS 10LYS 123
D
 ASP 12LYS 123
E
 ASP 12ASN 121
F
 GLN 13LYS 123
G
 G 369 A 382
H
 G 117 U 129
I
 U 3 U 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8UB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
32 40Right-handed alpha
Helix 4
AA4
A
41 54Right-handed alpha
Helix 5
AA5
A
80 94Right-handed alpha
Helix 6
AA6
A
95 98Right-handed 310
Helix 7
AA7
A
114 128Right-handed alpha
Helix 8
AA8
A
129 131Right-handed 310
Helix 9
AA9
A
142 146Right-handed 310
Helix 10
AB1
A
150 154Right-handed 310
Helix 11
AB2
A
163 172Right-handed alpha
Helix 12
AB3
A
183 203Right-handed alpha
Helix 13
AB4
A
225 241Right-handed alpha
Helix 14
AB5
A
273 289Right-handed alpha
Helix 15
AB6
A
294 307Right-handed alpha
Helix 16
AB7
A
315 324Right-handed alpha
Helix 17
AB8
B
10 32Right-handed alpha
Helix 18
AB9
B
38 50Right-handed alpha
Helix 19
AC1
B
51 61Right-handed alpha
Helix 20
AC2
B
65 88Right-handed alpha
Helix 21
AC3
B
95 122Right-handed alpha
Helix 22
AC4
C
11 34Right-handed alpha
Helix 23
AC5
C
38 50Right-handed alpha
Helix 24
AC6
C
51 62Right-handed alpha
Helix 25
AC7
C
64 88Right-handed alpha
Helix 26
AC8
C
95 122Right-handed alpha
Helix 27
AC9
D
14 34Right-handed alpha
Helix 28
AD1
D
35 37Right-handed 310
Helix 29
AD2
D
38 50Right-handed alpha
Helix 30
AD3
D
51 62Right-handed alpha
Helix 31
AD4
D
64 86Right-handed alpha
Helix 32
AD5
D
97 121Right-handed alpha
Helix 33
AD6
E
13 34Right-handed alpha
Helix 34
AD7
E
35 37Right-handed 310
Helix 35
AD8
E
38 50Right-handed alpha
Helix 36
AD9
E
51 62Right-handed alpha
Helix 37
AE1
E
65 86Right-handed alpha
Helix 38
AE2
E
95 121Right-handed alpha
Helix 39
AE3
F
14 28Right-handed alpha
Helix 40
AE4
F
38 50Right-handed alpha
Helix 41
AE5
F
51 61Right-handed alpha
Helix 42
AE6
F
64 87Right-handed alpha
Helix 43
AE7
F
88 93Right-handed 310
Helix 44
AE8
F
95 122Right-handed alpha
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There are 3 sheets in PDB entry 8UB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
74 78anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
216 220anti-parallel
Strand 3
A
133 139anti-parallel
Strand 4
A
246 253anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
263 265anti-parallel
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