Analysis of interatomic Contacts of Structural Units in PDB entry:
8UBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UBR entry

There is 1 chain in PDB entry 8UBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 1451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8UBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
10 16Right-handed alpha
Helix 3
AA3
A
17 19Right-handed 310
Helix 4
AA4
A
20 30Right-handed alpha
Helix 5
AA5
A
33 37Right-handed 310
Helix 6
AA6
A
45 64Right-handed alpha
Helix 7
AA7
A
68 109Right-handed alpha
Helix 8
AA8
A
119 165Right-handed alpha
Helix 9
AA9
A
168 173Right-handed alpha
Helix 10
AB1
A
176 188Right-handed alpha
Helix 11
AB2
A
189 194Right-handed alpha
Helix 12
AB3
A
195 198Right-handed 310
Helix 13
AB4
A
199 220Right-handed alpha
Helix 14
AB5
A
222 268Right-handed alpha
Helix 15
AB6
A
268 276Right-handed alpha
Helix 16
AB7
A
277 308Right-handed alpha
Helix 17
AB8
A
308 313Right-handed alpha
Helix 18
AB9
A
313 329Right-handed alpha
Helix 19
AC1
A
332 352Right-handed alpha
Helix 20
AC2
A
352 376Right-handed alpha
Helix 21
AC3
A
463 473Right-handed alpha
Helix 22
AC4
A
502 508Right-handed alpha
Helix 23
AC5
A
513 524Right-handed alpha
Helix 24
AC6
A
526 533Right-handed alpha
Helix 25
AC7
A
535 538Right-handed 310
Helix 26
AC8
A
549 564Right-handed alpha
Helix 27
AC9
A
579 591Right-handed alpha
Helix 28
AD1
A
606 612Right-handed alpha
Helix 29
AD2
A
629 636Right-handed alpha
Helix 30
AD3
A
846 854Right-handed alpha
Helix 31
AD4
A
856 886Right-handed alpha
Helix 32
AD5
A
913 922Right-handed alpha
Helix 33
AD6
A
922 927Right-handed alpha
Helix 34
AD7
A
934 959Right-handed alpha
Helix 35
AD8
A
960 965Right-handed alpha
Helix 36
AD9
A
968 985Right-handed alpha
Helix 37
AE1
A
985 1012Right-handed alpha
Helix 38
AE2
A
1012 1047Right-handed alpha
Helix 39
AE3
A
1048 1061Right-handed alpha
Helix 40
AE4
A
1061 1069Right-handed alpha
Helix 41
AE5
A
1070 1121Right-handed alpha
Helix 42
AE6
A
1128 1168Right-handed alpha
Helix 43
AE7
A
1249 1259Right-handed alpha
Helix 44
AE8
A
1278 1284Right-handed alpha
Helix 45
AE9
A
1300 1305Right-handed alpha
Helix 46
AF1
A
1311 1322Right-handed alpha
Helix 47
AF2
A
1324 1329Right-handed alpha
Helix 48
AF3
A
1347 1362Right-handed alpha
Helix 49
AF4
A
1377 1391Right-handed alpha
Helix 50
AF5
A
1404 1410Right-handed 310
Helix 51
AF6
A
1426 1433Right-handed alpha
Helix 52
AF7
A
1434 1441Right-handed alpha
Helix 53
AF8
A
1442 1450Right-handed alpha
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There are 6 sheets in PDB entry 8UBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 448first strand
Strand 2
A
392 399anti-parallel
Strand 3
A
477 483anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
599 603parallel
Strand 4
A
453 457parallel
Strand 5
A
615 619parallel
Strand 6
A
624 628anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
540 541anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1227 1234first strand
Strand 2
A
1210 1218anti-parallel
Strand 3
A
1262 1269anti-parallel
Strand 4
A
1272 1273anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1286 1289first strand
Strand 2
A
1366 1370parallel
Strand 3
A
1396 1400parallel
Strand 4
A
1239 1243parallel
Strand 5
A
1412 1417parallel
Strand 6
A
1420 1424anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1298 1299first strand
Strand 2
A
1338 1339anti-parallel
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