Analysis of interatomic Contacts of Structural Units in PDB entry:
8UBS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UBS entry

There are 4 chains in PDB entry 8UBS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ILE 151
B	GLY 2	ILE 151
C	GLY 2	ILE 151
D	GLY 2	ILE 151

There are 8 helices in PDB entry 8UBS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	29	Right-handed alpha
Helix 2	AA2	A	96	98	Right-handed 310
Helix 3	AA3	B	21	28	Right-handed alpha
Helix 4	AA4	B	96	98	Right-handed 310
Helix 5	AA5	C	21	28	Right-handed alpha
Helix 6	AA6	C	96	98	Right-handed 310
Helix 7	AA7	D	21	28	Right-handed alpha
Helix 8	AA8	D	96	98	Right-handed 310

There are 20 sheets in PDB entry 8UBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	45	70	anti-parallel
Strand 3	A	73	79	anti-parallel
Strand 4	A	5	6	anti-parallel
Strand 5	A	112	134	anti-parallel
Strand 6	A	104	109	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	45	70	anti-parallel
Strand 3	A	112	134	anti-parallel
Strand 4	A	104	109	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	17	20	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	91	94	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	144	147	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	40	first strand
Strand 2	B	45	70	anti-parallel
Strand 3	B	73	79	anti-parallel
Strand 4	B	5	6	anti-parallel
Strand 5	B	112	134	anti-parallel
Strand 6	B	104	108	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	40	first strand
Strand 2	B	45	70	anti-parallel
Strand 3	B	112	134	anti-parallel
Strand 4	B	104	108	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	17	20	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	91	94	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	141	first strand
Strand 2	B	144	147	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	45	69	anti-parallel
Strand 3	C	75	79	anti-parallel
Strand 4	C	5	6	anti-parallel
Strand 5	C	114	134	anti-parallel
Strand 6	C	104	106	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	45	69	anti-parallel
Strand 3	C	114	134	anti-parallel
Strand 4	C	104	106	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	17	20	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	91	94	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	141	first strand
Strand 2	C	144	147	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	45	70	anti-parallel
Strand 3	D	73	79	anti-parallel
Strand 4	D	5	6	anti-parallel
Strand 5	D	112	134	anti-parallel
Strand 6	D	104	108	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	45	70	anti-parallel
Strand 3	D	112	134	anti-parallel
Strand 4	D	104	108	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	17	20	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	91	94	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	141	first strand
Strand 2	D	144	147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UBS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UBS