Analysis of interatomic Contacts of Structural Units in PDB entry:
8UBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UBT entry

There are 4 chains in PDB entry 8UBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 15CYS 496
B
 PRO 2CYS 160
C
 PRO 319THR 693
D
 HIS 16PHE 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8UBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 26Right-handed 310
Helix 2
AA2
A
27 32Right-handed alpha
Helix 3
AA3
A
38 54Right-handed alpha
Helix 4
AA4
A
86 104Right-handed alpha
Helix 5
AA5
A
115 120Right-handed alpha
Helix 6
AA6
A
120 128Right-handed alpha
Helix 7
AA7
A
128 133Right-handed alpha
Helix 8
AA8
A
138 143Right-handed alpha
Helix 9
AA9
A
158 167Right-handed alpha
Helix 10
AB1
A
174 178Right-handed 310
Helix 11
AB2
A
179 188Right-handed alpha
Helix 12
AB3
A
197 211Right-handed alpha
Helix 13
AB4
A
227 232Right-handed alpha
Helix 14
AB5
A
233 252Right-handed alpha
Helix 15
AB6
A
256 274Right-handed alpha
Helix 16
AB7
A
283 288Right-handed alpha
Helix 17
AB8
A
289 292Right-handed 310
Helix 18
AB9
A
303 313Right-handed alpha
Helix 19
AC1
A
316 328Right-handed alpha
Helix 20
AC2
A
334 336Right-handed 310
Helix 21
AC3
A
337 356Right-handed alpha
Helix 22
AC4
A
357 361Right-handed 310
Helix 23
AC5
A
362 384Right-handed alpha
Helix 24
AC6
A
388 400Right-handed alpha
Helix 25
AC7
A
416 430Right-handed alpha
Helix 26
AC8
A
440 454Right-handed alpha
Helix 27
AC9
A
459 476Right-handed alpha
Helix 28
AD1
A
481 495Right-handed alpha
Helix 29
AD2
B
17 22Right-handed alpha
Helix 30
AD3
B
24 33Right-handed alpha
Helix 31
AD4
B
51 65Right-handed alpha
Helix 32
AD5
B
86 93Right-handed alpha
Helix 33
AD6
B
96 111Right-handed alpha
Helix 34
AD7
B
112 128Right-handed alpha
Helix 35
AD8
B
131 140Right-handed alpha
Helix 36
AD9
B
146 157Right-handed alpha
Helix 37
AE1
C
320 324Right-handed 310
Helix 38
AE2
C
325 334Right-handed alpha
Helix 39
AE3
C
337 343Right-handed alpha
Helix 40
AE4
C
344 348Right-handed 310
Helix 41
AE5
C
349 357Right-handed alpha
Helix 42
AE6
C
377 385Right-handed alpha
Helix 43
AE7
C
400 404Right-handed 310
Helix 44
AE8
C
406 411Right-handed alpha
Helix 45
AE9
C
426 437Right-handed alpha
Helix 46
AF1
C
452 463Right-handed alpha
Helix 47
AF2
C
478 488Right-handed alpha
Helix 48
AF3
C
504 512Right-handed alpha
Helix 49
AF4
C
529 534Right-handed alpha
Helix 50
AF5
C
555 563Right-handed alpha
Helix 51
AF6
C
580 591Right-handed alpha
Helix 52
AF7
C
607 616Right-handed alpha
Helix 53
AF8
C
634 642Right-handed alpha
Helix 54
AF9
C
659 668Right-handed alpha
Helix 55
AG1
C
681 688Right-handed 310
Helix 56
AG2
D
20 30Right-handed alpha
Helix 57
AG3
D
49 56Right-handed alpha
Helix 58
AG4
D
56 65Right-handed alpha
Helix 59
AG5
D
80 85Right-handed alpha
Helix 60
AG6
D
88 93Right-handed alpha
Helix 61
AG7
D
103 114Right-handed alpha
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There are 3 sheets in PDB entry 8UBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
4 7anti-parallel
Strand 3
B
45 46parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
417 418first strand
Strand 2
C
442 444parallel
Strand 3
C
468 470parallel
Strand 4
C
494 497parallel
Strand 5
C
520 523parallel
Strand 6
C
544 546parallel
Strand 7
C
570 571parallel
Strand 8
C
596 597parallel
Strand 9
C
621 622parallel
Strand 10
C
647 648parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 47first strand
Strand 2
D
36 40anti-parallel
Strand 3
D
71 74parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il