Analysis of interatomic Contacts of Structural Units in PDB entry:
8UBU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UBU entry

There are 10 chains in PDB entry 8UBU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 17	LYS 645
B	LYS 19	VAL 38
C	PRO 2	CYS 160
D	PRO 319	MET 690
E	SER 17	ILE 118
G	PRO 2	CYS 160
H	LEU 17	SER 646
I	LYS 19	VAL 38
K	PRO 319	MET 690
L	HIS 16	ILE 118

There are114 helices in PDB entry 8UBU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	33	Right-handed alpha
Helix 2	AA2	A	43	54	Right-handed alpha
Helix 3	AA3	A	85	104	Right-handed alpha
Helix 4	AA4	A	114	137	Right-handed alpha
Helix 5	AA5	A	137	150	Right-handed alpha
Helix 6	AA6	A	158	172	Right-handed alpha
Helix 7	AA7	A	177	188	Right-handed alpha
Helix 8	AA8	A	197	211	Right-handed alpha
Helix 9	AA9	A	226	255	Right-handed alpha
Helix 10	AB1	A	259	278	Right-handed alpha
Helix 11	AB2	A	283	296	Right-handed alpha
Helix 12	AB3	A	299	313	Right-handed alpha
Helix 13	AB4	A	315	329	Right-handed alpha
Helix 14	AB5	A	333	356	Right-handed alpha
Helix 15	AB6	A	362	385	Right-handed alpha
Helix 16	AB7	A	388	405	Right-handed alpha
Helix 17	AB8	A	406	413	Right-handed alpha
Helix 18	AB9	A	416	430	Right-handed alpha
Helix 19	AC1	A	439	454	Right-handed alpha
Helix 20	AC2	A	458	476	Right-handed alpha
Helix 21	AC3	A	481	496	Right-handed alpha
Helix 22	AC4	A	498	527	Right-handed alpha
Helix 23	AC5	A	559	574	Right-handed alpha
Helix 24	AC6	A	583	586	Right-handed 310
Helix 25	AC7	A	604	613	Right-handed alpha
Helix 26	AC8	A	614	616	Right-handed 310
Helix 27	AC9	A	621	630	Right-handed alpha
Helix 28	AD1	A	632	645	Right-handed alpha
Helix 29	AD2	C	27	34	Right-handed alpha
Helix 30	AD3	C	53	65	Right-handed alpha
Helix 31	AD4	C	86	93	Right-handed alpha
Helix 32	AD5	C	102	110	Right-handed alpha
Helix 33	AD6	C	112	125	Right-handed alpha
Helix 34	AD7	C	130	139	Right-handed alpha
Helix 35	AD8	C	149	157	Right-handed alpha
Helix 36	AD9	D	325	334	Right-handed alpha
Helix 37	AE1	D	337	344	Right-handed alpha
Helix 38	AE2	D	349	356	Right-handed alpha
Helix 39	AE3	D	370	374	Right-handed 310
Helix 40	AE4	D	377	382	Right-handed alpha
Helix 41	AE5	D	400	411	Right-handed alpha
Helix 42	AE6	D	426	436	Right-handed alpha
Helix 43	AE7	D	453	463	Right-handed alpha
Helix 44	AE8	D	479	488	Right-handed alpha
Helix 45	AE9	D	529	534	Right-handed alpha
Helix 46	AF1	D	535	538	Right-handed 310
Helix 47	AF2	D	554	565	Right-handed alpha
Helix 48	AF3	D	581	591	Right-handed alpha
Helix 49	AF4	D	607	615	Right-handed alpha
Helix 50	AF5	D	631	642	Right-handed alpha
Helix 51	AF6	D	659	668	Right-handed alpha
Helix 52	AF7	D	680	690	Right-handed alpha
Helix 53	AF8	E	18	29	Right-handed alpha
Helix 54	AF9	E	49	56	Right-handed alpha
Helix 55	AG1	E	56	64	Right-handed alpha
Helix 56	AG2	E	80	94	Right-handed alpha
Helix 57	AG3	E	103	107	Right-handed 310
Helix 58	AG4	G	27	34	Right-handed alpha
Helix 59	AG5	G	53	65	Right-handed alpha
Helix 60	AG6	G	86	93	Right-handed alpha
Helix 61	AG7	G	102	110	Right-handed alpha
Helix 62	AG8	G	112	125	Right-handed alpha
Helix 63	AG9	G	130	139	Right-handed alpha
Helix 64	AH1	G	149	157	Right-handed alpha
Helix 65	AH2	H	18	33	Right-handed alpha
Helix 66	AH3	H	43	54	Right-handed alpha
Helix 67	AH4	H	85	104	Right-handed alpha
Helix 68	AH5	H	114	137	Right-handed alpha
Helix 69	AH6	H	137	150	Right-handed alpha
Helix 70	AH7	H	158	172	Right-handed alpha
Helix 71	AH8	H	177	188	Right-handed alpha
Helix 72	AH9	H	197	211	Right-handed alpha
Helix 73	AI1	H	226	255	Right-handed alpha
Helix 74	AI2	H	259	278	Right-handed alpha
Helix 75	AI3	H	283	296	Right-handed alpha
Helix 76	AI4	H	299	313	Right-handed alpha
Helix 77	AI5	H	315	329	Right-handed alpha
Helix 78	AI6	H	333	356	Right-handed alpha
Helix 79	AI7	H	362	385	Right-handed alpha
Helix 80	AI8	H	388	405	Right-handed alpha
Helix 81	AI9	H	406	413	Right-handed alpha
Helix 82	AJ1	H	416	430	Right-handed alpha
Helix 83	AJ2	H	439	454	Right-handed alpha
Helix 84	AJ3	H	458	476	Right-handed alpha
Helix 85	AJ4	H	481	496	Right-handed alpha
Helix 86	AJ5	H	498	527	Right-handed alpha
Helix 87	AJ6	H	559	574	Right-handed alpha
Helix 88	AJ7	H	583	586	Right-handed 310
Helix 89	AJ8	H	604	613	Right-handed alpha
Helix 90	AJ9	H	614	616	Right-handed 310
Helix 91	AK1	H	621	630	Right-handed alpha
Helix 92	AK2	H	632	646	Right-handed alpha
Helix 93	AK3	K	325	334	Right-handed alpha
Helix 94	AK4	K	337	344	Right-handed alpha
Helix 95	AK5	K	349	356	Right-handed alpha
Helix 96	AK6	K	370	374	Right-handed 310
Helix 97	AK7	K	377	382	Right-handed alpha
Helix 98	AK8	K	400	411	Right-handed alpha
Helix 99	AK9	K	426	436	Right-handed alpha
Helix 100	AL1	K	453	463	Right-handed alpha
Helix 101	AL2	K	479	488	Right-handed alpha
Helix 102	AL3	K	529	534	Right-handed alpha
Helix 103	AL4	K	535	538	Right-handed 310
Helix 104	AL5	K	554	565	Right-handed alpha
Helix 105	AL6	K	581	591	Right-handed alpha
Helix 106	AL7	K	607	615	Right-handed alpha
Helix 107	AL8	K	631	642	Right-handed alpha
Helix 108	AL9	K	659	668	Right-handed alpha
Helix 109	AM1	K	680	690	Right-handed alpha
Helix 110	AM2	L	17	29	Right-handed alpha
Helix 111	AM3	L	49	56	Right-handed alpha
Helix 112	AM4	L	56	65	Right-handed alpha
Helix 113	AM5	L	80	94	Right-handed alpha
Helix 114	AM6	L	103	107	Right-handed 310

There are 15 sheets in PDB entry 8UBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	B	26	28	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	541	first strand
Strand 2	B	31	35	parallel
Strand 3	A	577	581	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	591	first strand
Strand 2	A	600	602	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	13	17	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	522	first strand
Strand 2	D	544	546	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	598	599	first strand
Strand 2	D	623	624	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	36	40	anti-parallel
Strand 3	E	73	74	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	L	98	99	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	13	17	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	534	536	first strand
Strand 2	I	26	28	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	539	541	first strand
Strand 2	I	31	35	parallel
Strand 3	H	577	581	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	589	591	first strand
Strand 2	H	600	602	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	520	522	first strand
Strand 2	K	544	546	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	598	599	first strand
Strand 2	K	623	624	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	47	first strand
Strand 2	L	36	40	anti-parallel
Strand 3	L	71	74	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UBU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UBU