Analysis of interatomic Contacts of Structural Units in PDB entry:
8UBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UBV entry

There are 4 chains in PDB entry 8UBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 363ARG 686
C
 SER 17ILE 118
H
 LYS 363GLU 685
I
 HIS 16ILE 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8UBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
377 382Right-handed alpha
Helix 2
AA2
B
400 409Right-handed alpha
Helix 3
AA3
B
426 436Right-handed alpha
Helix 4
AA4
B
453 463Right-handed alpha
Helix 5
AA5
B
479 488Right-handed alpha
Helix 6
AA6
B
505 510Right-handed alpha
Helix 7
AA7
B
529 534Right-handed alpha
Helix 8
AA8
B
535 538Right-handed 310
Helix 9
AA9
B
554 565Right-handed alpha
Helix 10
AB1
B
580 588Right-handed alpha
Helix 11
AB2
B
607 616Right-handed alpha
Helix 12
AB3
B
631 642Right-handed alpha
Helix 13
AB4
B
659 668Right-handed alpha
Helix 14
AB5
B
680 686Right-handed alpha
Helix 15
AB6
C
18 29Right-handed alpha
Helix 16
AB7
C
49 56Right-handed alpha
Helix 17
AB8
C
56 64Right-handed alpha
Helix 18
AB9
C
80 94Right-handed alpha
Helix 19
AC1
C
103 107Right-handed 310
Helix 20
AC2
H
377 382Right-handed alpha
Helix 21
AC3
H
400 409Right-handed alpha
Helix 22
AC4
H
427 436Right-handed alpha
Helix 23
AC5
H
452 463Right-handed alpha
Helix 24
AC6
H
479 488Right-handed alpha
Helix 25
AC7
H
504 508Right-handed 310
Helix 26
AC8
H
529 536Right-handed alpha
Helix 27
AC9
H
554 565Right-handed alpha
Helix 28
AD1
H
580 591Right-handed alpha
Helix 29
AD2
H
607 616Right-handed alpha
Helix 30
AD3
H
631 642Right-handed alpha
Helix 31
AD4
H
659 668Right-handed alpha
Helix 32
AD5
I
17 29Right-handed alpha
Helix 33
AD6
I
49 56Right-handed alpha
Helix 34
AD7
I
56 65Right-handed alpha
Helix 35
AD8
I
80 94Right-handed alpha
Helix 36
AD9
I
103 107Right-handed 310
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There are 6 sheets in PDB entry 8UBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 571first strand
Strand 2
B
596 599parallel
Strand 3
B
621 624parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 47first strand
Strand 2
C
36 40anti-parallel
Strand 3
C
73 74parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 96first strand
Strand 2
I
98 99anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
443 444first strand
Strand 2
H
469 470parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
494 496first strand
Strand 2
H
520 522parallel
Strand 3
H
544 546parallel
Strand 4
H
570 571parallel
Strand 5
H
596 599parallel
Strand 6
H
621 624parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
43 47first strand
Strand 2
I
36 40anti-parallel
Strand 3
I
71 74parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il