Analysis of interatomic Contacts of Structural Units in PDB entry:
8UCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UCD entry

There are 5 chains in PDB entry 8UCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 66LEU 310
B
 LEU 67PRO 311
C
 LEU 67LEU 310
H
 GLN 1SER 120
L
 GLU 122ILE 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8UCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 70Right-handed 310
Helix 2
AA2
A
71 94Right-handed alpha
Helix 3
AA3
A
94 100Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
113 116Right-handed 310
Helix 6
AA6
A
117 142Right-handed alpha
Helix 7
AA7
A
151 160Right-handed alpha
Helix 8
AA8
A
160 180Right-handed alpha
Helix 9
AA9
A
185 202Right-handed alpha
Helix 10
AB1
A
209 236Right-handed alpha
Helix 11
AB2
A
238 243Right-handed alpha
Helix 12
AB3
A
246 273Right-handed alpha
Helix 13
AB4
A
289 295Right-handed alpha
Helix 14
AB5
A
295 310Right-handed alpha
Helix 15
AB6
B
72 94Right-handed alpha
Helix 16
AB7
B
94 100Right-handed alpha
Helix 17
AB8
B
113 116Right-handed 310
Helix 18
AB9
B
117 141Right-handed alpha
Helix 19
AC1
B
151 159Right-handed alpha
Helix 20
AC2
B
160 180Right-handed alpha
Helix 21
AC3
B
185 202Right-handed alpha
Helix 22
AC4
B
209 236Right-handed alpha
Helix 23
AC5
B
238 243Right-handed alpha
Helix 24
AC6
B
246 273Right-handed alpha
Helix 25
AC7
B
275 279Right-handed 310
Helix 26
AC8
B
289 295Right-handed alpha
Helix 27
AC9
B
295 310Right-handed alpha
Helix 28
AD1
C
68 70Right-handed 310
Helix 29
AD2
C
71 94Right-handed alpha
Helix 30
AD3
C
94 100Right-handed alpha
Helix 31
AD4
C
113 116Right-handed 310
Helix 32
AD5
C
117 142Right-handed alpha
Helix 33
AD6
C
151 159Right-handed alpha
Helix 34
AD7
C
160 181Right-handed alpha
Helix 35
AD8
C
182 184Right-handed 310
Helix 36
AD9
C
185 201Right-handed alpha
Helix 37
AE1
C
210 236Right-handed alpha
Helix 38
AE2
C
238 243Right-handed alpha
Helix 39
AE3
C
247 273Right-handed alpha
Helix 40
AE4
C
289 295Right-handed alpha
Helix 41
AE5
C
295 310Right-handed alpha
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There are 5 sheets in PDB entry 8UCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
115 119parallel
Strand 3
H
92 102anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
115 119parallel
Strand 3
H
92 102anti-parallel
Strand 4
H
106 111anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
126 127first strand
Strand 2
L
140 145anti-parallel
Strand 3
L
191 195anti-parallel
Strand 4
L
182 186anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
131 133first strand
Strand 2
L
222 225parallel
Strand 3
L
205 209anti-parallel
Strand 4
L
154 158anti-parallel
Strand 5
L
165 169anti-parallel
Strand 6
L
173 174anti-parallel
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