Analysis of interatomic Contacts of Structural Units in PDB entry:
8UCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UCE entry

There are 2 chains in PDB entry 8UCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 380
B
 MET 1VAL 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8UCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
16 26Right-handed alpha
Helix 3
AA3
A
73 83Right-handed alpha
Helix 4
AA4
A
117 123Right-handed alpha
Helix 5
AA5
A
123 128Right-handed alpha
Helix 6
AA6
A
130 136Right-handed alpha
Helix 7
AA7
A
181 193Right-handed alpha
Helix 8
AA8
A
204 206Right-handed 310
Helix 9
AA9
A
207 221Right-handed alpha
Helix 10
AB1
A
241 254Right-handed alpha
Helix 11
AB2
A
262 278Right-handed alpha
Helix 12
AB3
A
281 309Right-handed alpha
Helix 13
AB4
A
324 337Right-handed alpha
Helix 14
AB5
A
363 375Right-handed alpha
Helix 15
AB6
B
3 13Right-handed alpha
Helix 16
AB7
B
18 26Right-handed alpha
Helix 17
AB8
B
73 83Right-handed alpha
Helix 18
AB9
B
117 123Right-handed alpha
Helix 19
AC1
B
123 128Right-handed alpha
Helix 20
AC2
B
130 136Right-handed alpha
Helix 21
AC3
B
181 193Right-handed alpha
Helix 22
AC4
B
204 206Right-handed 310
Helix 23
AC5
B
207 221Right-handed alpha
Helix 24
AC6
B
241 254Right-handed alpha
Helix 25
AC7
B
262 278Right-handed alpha
Helix 26
AC8
B
281 309Right-handed alpha
Helix 27
AC9
B
324 338Right-handed alpha
Helix 28
AD1
B
363 375Right-handed alpha
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There are 8 sheets in PDB entry 8UCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
54 55anti-parallel
Strand 4
A
61 62anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
236 240parallel
Strand 3
A
225 229anti-parallel
Strand 4
A
87 92anti-parallel
Strand 5
A
199 203anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
96 103anti-parallel
Strand 3
A
139 146anti-parallel
Strand 4
A
165 173anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 322first strand
Strand 2
A
355 362anti-parallel
Strand 3
A
341 349anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
54 55anti-parallel
Strand 4
B
61 62anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
236 240parallel
Strand 3
B
225 229anti-parallel
Strand 4
B
87 92anti-parallel
Strand 5
B
199 203anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 110first strand
Strand 2
B
96 103anti-parallel
Strand 3
B
139 146anti-parallel
Strand 4
B
165 173anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 322first strand
Strand 2
B
355 362anti-parallel
Strand 3
B
342 349anti-parallel
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