Analysis of interatomic Contacts of Structural Units in PDB entry:
8UCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UCJ entry

There are 12 chains in PDB entry 8UCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18LYS 476
a
 MET 1SER 535
b
 ASP 14GLN 249
c
 MET 1CYS 269
d
 GLN 44LEU 160
e
 LEU 26SER 151
f
 GLU 42PRO 141
g
 THR 3ASP 60
h
 ASP 27ILE 74
i
 SER 5GLU 61
j
 GLU 6VAL 80
k
 PHE 14LYS 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 8UCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 39Right-handed alpha
Helix 2
AA2
A
130 136Right-handed alpha
Helix 3
AA3
A
136 157Right-handed alpha
Helix 4
AA4
A
158 178Right-handed alpha
Helix 5
AA5
A
181 211Right-handed alpha
Helix 6
AA6
A
213 225Right-handed alpha
Helix 7
AA7
A
226 234Right-handed alpha
Helix 8
AA8
A
249 269Right-handed alpha
Helix 9
AA9
A
284 291Right-handed alpha
Helix 10
AB1
A
291 319Right-handed alpha
Helix 11
AB2
A
330 349Right-handed alpha
Helix 12
AB3
A
351 356Right-handed alpha
Helix 13
AB4
A
356 378Right-handed alpha
Helix 14
AB5
A
381 383Right-handed 310
Helix 15
AB6
A
384 414Right-handed alpha
Helix 16
AB7
A
418 447Right-handed alpha
Helix 17
AB8
A
448 464Right-handed alpha
Helix 18
AB9
A
465 471Right-handed 310
Helix 19
AC1
a
3 8Right-handed alpha
Helix 20
AC2
a
13 42Right-handed alpha
Helix 21
AC3
a
57 70Right-handed alpha
Helix 22
AC4
a
72 79Right-handed alpha
Helix 23
AC5
a
81 91Right-handed alpha
Helix 24
AC6
a
97 107Right-handed alpha
Helix 25
AC7
a
108 117Right-handed alpha
Helix 26
AC8
a
145 150Right-handed alpha
Helix 27
AC9
a
151 174Right-handed alpha
Helix 28
AD1
a
185 218Right-handed alpha
Helix 29
AD2
a
231 249Right-handed alpha
Helix 30
AD3
a
250 265Right-handed alpha
Helix 31
AD4
a
271 285Right-handed alpha
Helix 32
AD5
a
290 294Right-handed 310
Helix 33
AD6
a
300 313Right-handed alpha
Helix 34
AD7
a
314 332Right-handed alpha
Helix 35
AD8
a
337 362Right-handed alpha
Helix 36
AD9
a
365 370Right-handed alpha
Helix 37
AE1
a
372 384Right-handed alpha
Helix 38
AE2
a
386 404Right-handed alpha
Helix 39
AE3
a
408 428Right-handed alpha
Helix 40
AE4
a
428 437Right-handed alpha
Helix 41
AE5
a
446 448Right-handed 310
Helix 42
AE6
a
449 456Right-handed alpha
Helix 43
AE7
a
458 479Right-handed alpha
Helix 44
AE8
a
480 484Right-handed 310
Helix 45
AE9
a
488 492Right-handed 310
Helix 46
AF1
a
501 508Right-handed alpha
Helix 47
AF2
a
515 519Right-handed 310
Helix 48
AF3
b
28 63Right-handed alpha
Helix 49
AF4
b
78 105Right-handed alpha
Helix 50
AF5
b
238 247Right-handed alpha
Helix 51
AF6
c
21 41Right-handed alpha
Helix 52
AF7
c
50 75Right-handed alpha
Helix 53
AF8
c
80 114Right-handed alpha
Helix 54
AF9
c
136 157Right-handed alpha
Helix 55
AG1
c
167 188Right-handed alpha
Helix 56
AG2
c
200 209Right-handed alpha
Helix 57
AG3
c
210 232Right-handed alpha
Helix 58
AG4
c
241 258Right-handed alpha
Helix 59
AG5
d
56 60Right-handed 310
Helix 60
AG6
d
79 89Right-handed alpha
Helix 61
AG7
e
27 32Right-handed alpha
Helix 62
AG8
e
46 54Right-handed alpha
Helix 63
AG9
e
65 77Right-handed alpha
Helix 64
AH1
e
80 84Right-handed 310
Helix 65
AH2
e
88 116Right-handed alpha
Helix 66
AH3
e
124 129Right-handed alpha
Helix 67
AH4
e
129 138Right-handed alpha
Helix 68
AH5
f
44 57Right-handed alpha
Helix 69
AH6
f
61 73Right-handed alpha
Helix 70
AH7
f
80 94Right-handed alpha
Helix 71
AH8
f
97 111Right-handed alpha
Helix 72
AH9
f
114 122Right-handed alpha
Helix 73
AI1
f
127 132Right-handed alpha
Helix 74
AI2
f
135 140Right-handed alpha
Helix 75
AI3
g
7 12Right-handed alpha
Helix 76
AI4
g
21 25Right-handed 310
Helix 77
AI5
g
28 47Right-handed alpha
Helix 78
AI6
h
45 57Right-handed alpha
Helix 79
AI7
h
58 70Right-handed alpha
Helix 80
AI8
i
12 25Right-handed alpha
Helix 81
AI9
i
25 31Right-handed alpha
Helix 82
AJ1
i
40 61Right-handed alpha
Helix 83
AJ2
j
21 38Right-handed alpha
Helix 84
AJ3
j
43 46Right-handed 310
Helix 85
AJ4
j
47 54Right-handed alpha
Helix 86
AJ5
j
58 71Right-handed alpha
Helix 87
AJ6
k
23 31Right-handed alpha
Helix 88
AJ7
k
39 51Right-handed alpha
Helix 89
AJ8
k
53 71Right-handed alpha
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There are 5 sheets in PDB entry 8UCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
533 534first strand
Strand 2
d
123 125parallel
Strand 3
d
136 138anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
140 143first strand
Strand 2
b
124 128anti-parallel
Strand 3
b
114 119anti-parallel
Strand 4
b
173 179parallel
Strand 5
b
203 207anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
165 168first strand
Strand 2
b
231 237parallel
Strand 3
b
214 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
184 188first strand
Strand 2
b
193 197anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
112 116first strand
Strand 2
d
155 159parallel
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