Analysis of interatomic Contacts of Structural Units in PDB entry:
8UCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UCM entry

There are 10 chains in PDB entry 8UCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18PRO 474
a
 MET 1SER 535
b
 ASP 14GLN 249
c
 MET 1GLY 268
d
 GLN 44LEU 160
e
 ASN 28SER 151
f
 GLU 42PRO 141
g
 THR 3ASP 60
h
 ASP 27ILE 74
i
 SER 5ALA 60
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 8UCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 36Right-handed alpha
Helix 2
AA2
A
43 51Right-handed alpha
Helix 3
AA3
A
128 135Right-handed alpha
Helix 4
AA4
A
136 156Right-handed alpha
Helix 5
AA5
A
158 178Right-handed alpha
Helix 6
AA6
A
181 211Right-handed alpha
Helix 7
AA7
A
215 225Right-handed alpha
Helix 8
AA8
A
226 235Right-handed alpha
Helix 9
AA9
A
235 246Right-handed alpha
Helix 10
AB1
A
248 270Right-handed alpha
Helix 11
AB2
A
284 289Right-handed alpha
Helix 12
AB3
A
291 324Right-handed alpha
Helix 13
AB4
A
328 333Right-handed alpha
Helix 14
AB5
A
334 348Right-handed alpha
Helix 15
AB6
A
350 356Right-handed alpha
Helix 16
AB7
A
356 375Right-handed alpha
Helix 17
AB8
A
376 378Right-handed 310
Helix 18
AB9
A
380 383Right-handed 310
Helix 19
AC1
A
384 414Right-handed alpha
Helix 20
AC2
A
418 446Right-handed alpha
Helix 21
AC3
A
448 464Right-handed alpha
Helix 22
AC4
A
465 471Right-handed 310
Helix 23
AC5
a
3 8Right-handed alpha
Helix 24
AC6
a
13 42Right-handed alpha
Helix 25
AC7
a
57 70Right-handed alpha
Helix 26
AC8
a
72 79Right-handed alpha
Helix 27
AC9
a
81 91Right-handed alpha
Helix 28
AD1
a
97 107Right-handed alpha
Helix 29
AD2
a
108 118Right-handed alpha
Helix 30
AD3
a
145 151Right-handed alpha
Helix 31
AD4
a
151 174Right-handed alpha
Helix 32
AD5
a
185 219Right-handed alpha
Helix 33
AD6
a
230 249Right-handed alpha
Helix 34
AD7
a
250 265Right-handed alpha
Helix 35
AD8
a
271 285Right-handed alpha
Helix 36
AD9
a
300 313Right-handed alpha
Helix 37
AE1
a
314 331Right-handed alpha
Helix 38
AE2
a
337 356Right-handed alpha
Helix 39
AE3
a
356 361Right-handed alpha
Helix 40
AE4
a
365 370Right-handed alpha
Helix 41
AE5
a
372 384Right-handed alpha
Helix 42
AE6
a
386 404Right-handed alpha
Helix 43
AE7
a
408 437Right-handed alpha
Helix 44
AE8
a
446 448Right-handed 310
Helix 45
AE9
a
449 457Right-handed alpha
Helix 46
AF1
a
459 479Right-handed alpha
Helix 47
AF2
a
481 485Right-handed 310
Helix 48
AF3
a
501 508Right-handed alpha
Helix 49
AF4
a
515 519Right-handed 310
Helix 50
AF5
b
28 63Right-handed alpha
Helix 51
AF6
b
77 105Right-handed alpha
Helix 52
AF7
b
189 192Right-handed 310
Helix 53
AF8
b
238 247Right-handed alpha
Helix 54
AF9
c
21 41Right-handed alpha
Helix 55
AG1
c
48 71Right-handed alpha
Helix 56
AG2
c
80 114Right-handed alpha
Helix 57
AG3
c
136 152Right-handed alpha
Helix 58
AG4
c
152 157Right-handed alpha
Helix 59
AG5
c
167 187Right-handed alpha
Helix 60
AG6
c
200 209Right-handed alpha
Helix 61
AG7
c
210 232Right-handed alpha
Helix 62
AG8
c
240 261Right-handed alpha
Helix 63
AG9
d
79 89Right-handed alpha
Helix 64
AH1
e
46 54Right-handed alpha
Helix 65
AH2
e
65 77Right-handed alpha
Helix 66
AH3
e
80 84Right-handed 310
Helix 67
AH4
e
88 116Right-handed alpha
Helix 68
AH5
e
124 129Right-handed alpha
Helix 69
AH6
e
129 138Right-handed alpha
Helix 70
AH7
f
44 57Right-handed alpha
Helix 71
AH8
f
61 71Right-handed alpha
Helix 72
AH9
f
80 94Right-handed alpha
Helix 73
AI1
f
97 111Right-handed alpha
Helix 74
AI2
f
113 122Right-handed alpha
Helix 75
AI3
f
125 132Right-handed alpha
Helix 76
AI4
f
135 140Right-handed alpha
Helix 77
AI5
g
7 12Right-handed alpha
Helix 78
AI6
g
28 47Right-handed alpha
Helix 79
AI7
h
45 70Right-handed alpha
Helix 80
AI8
i
12 22Right-handed alpha
Helix 81
AI9
i
23 33Right-handed alpha
Helix 82
AJ1
i
40 60Right-handed alpha
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There are 5 sheets in PDB entry 8UCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
533 534first strand
Strand 2
d
123 125parallel
Strand 3
d
136 138anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
140 143first strand
Strand 2
b
124 128anti-parallel
Strand 3
b
114 119anti-parallel
Strand 4
b
173 179parallel
Strand 5
b
203 207anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
165 168first strand
Strand 2
b
232 237parallel
Strand 3
b
213 217anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
184 188first strand
Strand 2
b
193 197anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
112 116first strand
Strand 2
d
155 159parallel
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