Analysis of interatomic Contacts of Structural Units in PDB entry:
8UCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UCP entry

There are 10 chains in PDB entry 8UCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18LYS 476
a
 MET 1SER 535
b
 ASP 14GLN 249
c
 MET 1GLY 268
d
 GLN 44LEU 160
e
 ASN 28SER 151
f
 GLU 42PRO 141
g
 THR 3ASP 60
h
 ASP 27ILE 74
i
 SER 5ALA 60
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 77 helices in PDB entry 8UCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 39Right-handed alpha
Helix 2
AA2
A
134 156Right-handed alpha
Helix 3
AA3
A
158 179Right-handed alpha
Helix 4
AA4
A
181 211Right-handed alpha
Helix 5
AA5
A
213 226Right-handed alpha
Helix 6
AA6
A
226 235Right-handed alpha
Helix 7
AA7
A
242 247Right-handed 310
Helix 8
AA8
A
248 268Right-handed alpha
Helix 9
AA9
A
284 291Right-handed alpha
Helix 10
AB1
A
291 323Right-handed alpha
Helix 11
AB2
A
326 333Right-handed alpha
Helix 12
AB3
A
334 356Right-handed alpha
Helix 13
AB4
A
356 378Right-handed alpha
Helix 14
AB5
A
380 414Right-handed alpha
Helix 15
AB6
A
418 435Right-handed alpha
Helix 16
AB7
A
436 444Right-handed alpha
Helix 17
AB8
A
448 464Right-handed alpha
Helix 18
AB9
A
465 471Right-handed 310
Helix 19
AC1
a
3 8Right-handed alpha
Helix 20
AC2
a
12 15Right-handed 310
Helix 21
AC3
a
16 42Right-handed alpha
Helix 22
AC4
a
57 70Right-handed alpha
Helix 23
AC5
a
72 79Right-handed alpha
Helix 24
AC6
a
85 91Right-handed alpha
Helix 25
AC7
a
97 107Right-handed alpha
Helix 26
AC8
a
107 118Right-handed alpha
Helix 27
AC9
a
145 174Right-handed alpha
Helix 28
AD1
a
185 219Right-handed alpha
Helix 29
AD2
a
231 249Right-handed alpha
Helix 30
AD3
a
250 264Right-handed alpha
Helix 31
AD4
a
271 286Right-handed alpha
Helix 32
AD5
a
290 294Right-handed 310
Helix 33
AD6
a
300 313Right-handed alpha
Helix 34
AD7
a
314 331Right-handed alpha
Helix 35
AD8
a
337 361Right-handed alpha
Helix 36
AD9
a
365 370Right-handed alpha
Helix 37
AE1
a
372 384Right-handed alpha
Helix 38
AE2
a
386 404Right-handed alpha
Helix 39
AE3
a
408 428Right-handed alpha
Helix 40
AE4
a
428 437Right-handed alpha
Helix 41
AE5
a
446 448Right-handed 310
Helix 42
AE6
a
449 479Right-handed alpha
Helix 43
AE7
a
481 487Right-handed 310
Helix 44
AE8
a
488 492Right-handed 310
Helix 45
AE9
a
501 508Right-handed alpha
Helix 46
AF1
a
514 519Right-handed 310
Helix 47
AF2
b
28 63Right-handed alpha
Helix 48
AF3
b
78 105Right-handed alpha
Helix 49
AF4
b
147 151Right-handed 310
Helix 50
AF5
b
238 247Right-handed alpha
Helix 51
AF6
c
21 41Right-handed alpha
Helix 52
AF7
c
48 75Right-handed alpha
Helix 53
AF8
c
80 114Right-handed alpha
Helix 54
AF9
c
136 161Right-handed alpha
Helix 55
AG1
c
167 187Right-handed alpha
Helix 56
AG2
c
199 232Right-handed alpha
Helix 57
AG3
c
240 261Right-handed alpha
Helix 58
AG4
d
79 88Right-handed alpha
Helix 59
AG5
e
45 53Right-handed alpha
Helix 60
AG6
e
65 77Right-handed alpha
Helix 61
AG7
e
80 84Right-handed 310
Helix 62
AG8
e
88 116Right-handed alpha
Helix 63
AG9
e
129 138Right-handed alpha
Helix 64
AH1
f
44 57Right-handed alpha
Helix 65
AH2
f
61 73Right-handed alpha
Helix 66
AH3
f
80 95Right-handed alpha
Helix 67
AH4
f
97 111Right-handed alpha
Helix 68
AH5
f
113 122Right-handed alpha
Helix 69
AH6
f
124 132Right-handed alpha
Helix 70
AH7
f
135 140Right-handed alpha
Helix 71
AH8
g
7 16Right-handed alpha
Helix 72
AH9
g
28 48Right-handed alpha
Helix 73
AI1
h
45 70Right-handed alpha
Helix 74
AI2
i
12 25Right-handed alpha
Helix 75
AI3
i
25 33Right-handed alpha
Helix 76
AI4
i
34 39Right-handed alpha
Helix 77
AI5
i
40 60Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8UCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
140 143first strand
Strand 2
b
124 128anti-parallel
Strand 3
b
114 119anti-parallel
Strand 4
b
173 179parallel
Strand 5
b
203 207anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
165 168first strand
Strand 2
b
232 237parallel
Strand 3
b
214 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
184 188first strand
Strand 2
b
193 197anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
112 116first strand
Strand 2
d
155 159parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
123 125first strand
Strand 2
d
136 138anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il