Analysis of interatomic Contacts of Structural Units in PDB entry:
8UCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UCV entry

There are 4 chains in PDB entry 8UCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 339PHE 1242
B
 ILE 277THR 462
C
 T 13 T 48
D
 G 2 G 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 8UCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
409 426Right-handed alpha
Helix 2
AA2
A
482 491Right-handed alpha
Helix 3
AA3
A
522 524Right-handed 310
Helix 4
AA4
A
597 606Right-handed alpha
Helix 5
AA5
A
614 630Right-handed alpha
Helix 6
AA6
A
642 655Right-handed alpha
Helix 7
AA7
A
659 663Right-handed 310
Helix 8
AA8
A
678 685Right-handed alpha
Helix 9
AA9
A
693 701Right-handed alpha
Helix 10
AB1
A
707 715Right-handed alpha
Helix 11
AB2
A
724 731Right-handed alpha
Helix 12
AB3
A
734 760Right-handed alpha
Helix 13
AB4
A
760 773Right-handed alpha
Helix 14
AB5
A
775 781Right-handed alpha
Helix 15
AB6
A
784 798Right-handed alpha
Helix 16
AB7
A
862 872Right-handed alpha
Helix 17
AB8
A
905 926Right-handed alpha
Helix 18
AB9
A
931 955Right-handed alpha
Helix 19
AC1
A
956 958Right-handed 310
Helix 20
AC2
A
965 990Right-handed alpha
Helix 21
AC3
A
1010 1027Right-handed alpha
Helix 22
AC4
A
1073 1077Right-handed 310
Helix 23
AC5
A
1081 1097Right-handed alpha
Helix 24
AC6
A
1100 1121Right-handed alpha
Helix 25
AC7
A
1125 1130Right-handed 310
Helix 26
AC8
A
1148 1160Right-handed alpha
Helix 27
AC9
A
1183 1186Right-handed 310
Helix 28
AD1
A
1190 1197Right-handed alpha
Helix 29
AD2
A
1203 1211Right-handed alpha
Helix 30
AD3
A
1212 1220Right-handed alpha
Helix 31
AD4
A
1227 1235Right-handed alpha
Helix 32
AD5
A
1238 1242Right-handed 310
Helix 33
AD6
B
278 288Right-handed alpha
Helix 34
AD7
B
291 305Right-handed alpha
Helix 35
AD8
B
308 323Right-handed alpha
Helix 36
AD9
B
325 339Right-handed alpha
Helix 37
AE1
B
343 359Right-handed alpha
Helix 38
AE2
B
372 379Right-handed alpha
Helix 39
AE3
B
390 395Right-handed alpha
Helix 40
AE4
B
396 407Right-handed alpha
Helix 41
AE5
B
410 423Right-handed alpha
Helix 42
AE6
B
425 438Right-handed alpha
Helix 43
AE7
B
449 462Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8UCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 520first strand
Strand 2
A
372 380parallel
Strand 3
A
359 367anti-parallel
Strand 4
A
341 349anti-parallel
Strand 5
A
497 501anti-parallel
Strand 6
A
526 528anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 438first strand
Strand 2
A
449 457anti-parallel
Strand 3
A
385 391anti-parallel
Strand 4
A
473 477anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 612first strand
Strand 2
A
581 587parallel
Strand 3
A
555 568anti-parallel
Strand 4
A
537 548anti-parallel
Strand 5
A
633 636parallel
Strand 6
A
689 692parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 851first strand
Strand 2
A
1034 1047anti-parallel
Strand 3
A
855 860anti-parallel
Strand 4
A
1001 1005anti-parallel
Strand 5
A
993 996anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 851first strand
Strand 2
A
1034 1047anti-parallel
Strand 3
A
1050 1060anti-parallel
Strand 4
A
1063 1071anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1131 1133first strand
Strand 2
A
1171 1177anti-parallel
Strand 3
A
1188 1189anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1131 1133first strand
Strand 2
A
1171 1177anti-parallel
Strand 3
A
1201 1202anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il