Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UDA entry

There are 2 chains in PDB entry 8UDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2SER 223
B
 ALA 2SER 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8UDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
49 53Right-handed 310
Helix 4
AA4
A
74 87Right-handed alpha
Helix 5
AA5
A
92 118Right-handed alpha
Helix 6
AA6
A
121 148Right-handed alpha
Helix 7
AA7
A
159 176Right-handed alpha
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
183 196Right-handed alpha
Helix 10
AB1
A
196 204Right-handed alpha
Helix 11
AB2
B
14 25Right-handed alpha
Helix 12
AB3
B
43 50Right-handed alpha
Helix 13
AB4
B
51 53Right-handed 310
Helix 14
AB5
B
74 86Right-handed alpha
Helix 15
AB6
B
92 118Right-handed alpha
Helix 16
AB7
B
121 148Right-handed alpha
Helix 17
AB8
B
159 176Right-handed alpha
Helix 18
AB9
B
177 181Right-handed 310
Helix 19
AC1
B
184 195Right-handed alpha
Helix 20
AC2
B
196 205Right-handed alpha
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There are 2 sheets in PDB entry 8UDA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
4 8parallel
Strand 3
A
62 64anti-parallel
Strand 4
A
71 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
4 8parallel
Strand 3
B
62 65anti-parallel
Strand 4
B
70 72anti-parallel
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