Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UDC entry

There is 1 chain in PDB entry 8UDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 122LEU 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8UDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 155Right-handed alpha
Helix 2
AA2
A
206 218Right-handed alpha
Helix 3
AA3
A
232 240Right-handed alpha
Helix 4
AA4
A
301 305Right-handed alpha
Helix 5
AA5
A
306 308Right-handed 310
Helix 6
AA6
A
310 331Right-handed alpha
Helix 7
AA7
A
390 395Right-handed alpha
Helix 8
AA8
A
408 422Right-handed alpha
Helix 9
AA9
A
440 444Right-handed 310
Helix 10
AB1
A
452 463Right-handed alpha
Helix 11
AB2
A
466 470Right-handed 310
Helix 12
AB3
A
472 486Right-handed alpha
Helix 13
AB4
A
487 492Right-handed 310
Helix 14
AB5
A
499 517Right-handed alpha
Helix 15
AB6
A
538 549Right-handed alpha
Helix 16
AB7
A
551 566Right-handed alpha
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There are 3 sheets in PDB entry 8UDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 170first strand
Strand 2
A
175 181anti-parallel
Strand 3
A
193 201anti-parallel
Strand 4
A
287 295anti-parallel
Strand 5
A
253 258anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
343 346anti-parallel
Strand 3
A
354 357anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
403 405anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il