Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UDF entry

There are 2 chains in PDB entry 8UDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 307SER 450
A
 GLY 452GLY 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8UDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
316 321Right-handed alpha
Helix 2
AA2
A
347 350Right-handed 310
Helix 3
AA3
A
353 357Right-handed 310
Helix 4
AA4
A
359 366Right-handed alpha
Helix 5
AA5
A
368 370Right-handed 310
Helix 6
AA6
A
506 520Right-handed alpha
Helix 7
AA7
A
532 543Right-handed alpha
Helix 8
AA8
A
549 556Right-handed alpha
Helix 9
AA9
A
556 564Right-handed alpha
Helix 10
AB1
A
566 581Right-handed alpha
Helix 11
AB2
A
598 606Right-handed alpha
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There are 3 sheets in PDB entry 8UDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 381first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
323 328anti-parallel
Strand 4
A
331 338anti-parallel
Strand 5
A
341 345anti-parallel
Strand 6
A
392 397anti-parallel
Strand 7
A
383 389anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
462 472parallel
Strand 3
A
454 459anti-parallel
Strand 4
A
417 424anti-parallel
Strand 5
A
427 435anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
462 472parallel
Strand 3
A
478 481anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il