Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UDI entry

There are 2 chains in PDB entry 8UDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 254
B
 MET 1LYS 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8UDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
43 59Right-handed alpha
Helix 3
AA3
A
60 62Right-handed 310
Helix 4
AA4
A
70 77Right-handed alpha
Helix 5
AA5
A
77 84Right-handed alpha
Helix 6
AA6
A
92 104Right-handed alpha
Helix 7
AA7
A
116 123Right-handed alpha
Helix 8
AA8
A
123 132Right-handed alpha
Helix 9
AA9
A
144 151Right-handed alpha
Helix 10
AB1
A
156 168Right-handed alpha
Helix 11
AB2
A
183 186Right-handed 310
Helix 12
AB3
A
187 199Right-handed alpha
Helix 13
AB4
A
210 220Right-handed alpha
Helix 14
AB5
A
241 253Right-handed alpha
Helix 15
AB6
B
12 23Right-handed alpha
Helix 16
AB7
B
43 59Right-handed alpha
Helix 17
AB8
B
60 62Right-handed 310
Helix 18
AB9
B
70 77Right-handed alpha
Helix 19
AC1
B
77 84Right-handed alpha
Helix 20
AC2
B
93 104Right-handed alpha
Helix 21
AC3
B
116 123Right-handed alpha
Helix 22
AC4
B
123 132Right-handed alpha
Helix 23
AC5
B
144 151Right-handed alpha
Helix 24
AC6
B
156 168Right-handed alpha
Helix 25
AC7
B
183 186Right-handed 310
Helix 26
AC8
B
187 199Right-handed alpha
Helix 27
AC9
B
210 223Right-handed alpha
Helix 28
AD1
B
241 253Right-handed alpha
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There are 4 sheets in PDB entry 8UDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
66 68parallel
Strand 3
A
2 7parallel
Strand 4
A
27 32parallel
Strand 5
A
233 238parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
111 115parallel
Strand 3
A
176 180parallel
Strand 4
A
206 209parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
66 68parallel
Strand 3
B
2 7parallel
Strand 4
B
27 32parallel
Strand 5
B
233 238parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 141first strand
Strand 2
B
111 115parallel
Strand 3
B
176 180parallel
Strand 4
B
206 209parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il