Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UDL entry

There are 5 chains in PDB entry 8UDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 69SER 1235
B
 GLU 64VAL 485
C
 GLU 67VAL 485
P
 A 3 C 24
T
 A 3 T 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 8UDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 76Right-handed 310
Helix 2
AA2
A
80 88Right-handed alpha
Helix 3
AA3
A
96 111Right-handed alpha
Helix 4
AA4
A
134 158Right-handed alpha
Helix 5
AA5
A
180 182Right-handed 310
Helix 6
AA6
A
225 230Right-handed alpha
Helix 7
AA7
A
240 244Right-handed 310
Helix 8
AA8
A
270 276Right-handed alpha
Helix 9
AA9
A
277 283Right-handed 310
Helix 10
AB1
A
294 301Right-handed alpha
Helix 11
AB2
A
305 315Right-handed alpha
Helix 12
AB3
A
346 351Right-handed 310
Helix 13
AB4
A
355 364Right-handed alpha
Helix 14
AB5
A
375 380Right-handed alpha
Helix 15
AB6
A
381 388Right-handed alpha
Helix 16
AB7
A
388 418Right-handed alpha
Helix 17
AB8
A
420 431Right-handed alpha
Helix 18
AB9
A
439 471Right-handed alpha
Helix 19
AC1
A
472 482Right-handed 310
Helix 20
AC2
A
537 554Right-handed alpha
Helix 21
AC3
A
555 559Right-handed 310
Helix 22
AC4
A
570 576Right-handed alpha
Helix 23
AC5
A
598 603Right-handed alpha
Helix 24
AC6
A
650 663Right-handed alpha
Helix 25
AC7
A
767 769Right-handed 310
Helix 26
AC8
A
770 776Right-handed alpha
Helix 27
AC9
A
786 810Right-handed alpha
Helix 28
AD1
A
817 821Right-handed 310
Helix 29
AD2
A
822 827Right-handed alpha
Helix 30
AD3
A
858 862Right-handed 310
Helix 31
AD4
A
871 878Right-handed 310
Helix 32
AD5
A
893 908Right-handed alpha
Helix 33
AD6
A
914 923Right-handed alpha
Helix 34
AD7
A
930 939Right-handed alpha
Helix 35
AD8
A
942 955Right-handed alpha
Helix 36
AD9
A
958 970Right-handed alpha
Helix 37
AE1
A
974 990Right-handed alpha
Helix 38
AE2
A
1054 1067Right-handed alpha
Helix 39
AE3
A
1080 1084Right-handed 310
Helix 40
AE4
A
1092 1123Right-handed alpha
Helix 41
AE5
A
1145 1168Right-handed alpha
Helix 42
AE6
A
1174 1178Right-handed 310
Helix 43
AE7
A
1205 1210Right-handed alpha
Helix 44
AE8
A
1219 1228Right-handed alpha
Helix 45
AE9
B
65 76Right-handed alpha
Helix 46
AF1
B
82 86Right-handed 310
Helix 47
AF2
B
87 94Right-handed alpha
Helix 48
AF3
B
100 119Right-handed alpha
Helix 49
AF4
B
151 157Right-handed 310
Helix 50
AF5
B
164 168Right-handed 310
Helix 51
AF6
B
169 177Right-handed alpha
Helix 52
AF7
B
185 191Right-handed alpha
Helix 53
AF8
B
192 197Right-handed alpha
Helix 54
AF9
B
198 201Right-handed 310
Helix 55
AG1
B
244 246Right-handed 310
Helix 56
AG2
B
247 267Right-handed alpha
Helix 57
AG3
B
269 271Right-handed 310
Helix 58
AG4
B
308 315Right-handed alpha
Helix 59
AG5
B
318 322Right-handed 310
Helix 60
AG6
B
342 354Right-handed alpha
Helix 61
AG7
B
362 366Right-handed alpha
Helix 62
AG8
B
391 409Right-handed alpha
Helix 63
AG9
B
415 419Right-handed 310
Helix 64
AH1
B
424 435Right-handed alpha
Helix 65
AH2
B
444 451Right-handed alpha
Helix 66
AH3
B
470 483Right-handed alpha
Helix 67
AH4
C
68 76Right-handed alpha
Helix 68
AH5
C
87 94Right-handed alpha
Helix 69
AH6
C
100 119Right-handed alpha
Helix 70
AH7
C
150 157Right-handed alpha
Helix 71
AH8
C
159 163Right-handed 310
Helix 72
AH9
C
165 177Right-handed alpha
Helix 73
AI1
C
185 191Right-handed alpha
Helix 74
AI2
C
192 197Right-handed alpha
Helix 75
AI3
C
244 246Right-handed 310
Helix 76
AI4
C
247 266Right-handed alpha
Helix 77
AI5
C
269 271Right-handed 310
Helix 78
AI6
C
308 315Right-handed alpha
Helix 79
AI7
C
318 322Right-handed 310
Helix 80
AI8
C
342 354Right-handed alpha
Helix 81
AI9
C
391 409Right-handed alpha
Helix 82
AJ1
C
417 420Right-handed 310
Helix 83
AJ2
C
424 435Right-handed alpha
Helix 84
AJ3
C
444 451Right-handed alpha
Helix 85
AJ4
C
470 484Right-handed alpha
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There are 14 sheets in PDB entry 8UDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
211 215anti-parallel
Strand 5
A
194 200anti-parallel
Strand 6
A
265 268parallel
Strand 7
A
290 293parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
814 815anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 751first strand
Strand 2
A
619 624anti-parallel
Strand 3
A
610 615anti-parallel
Strand 4
A
606 607anti-parallel
Strand 5
A
779 780anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1127 1132first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1183 1186anti-parallel
Strand 5
A
1216 1218anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
991 992first strand
Strand 2
A
1050 1051anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
296 307anti-parallel
Strand 6
B
285 293anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
C
148 149anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 218parallel
Strand 3
C
230 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
296 307anti-parallel
Strand 6
C
285 293anti-parallel
Strand 7
C
273 279anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 387parallel
Strand 3
C
439 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
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