Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UDT entry

There are 3 chains in PDB entry 8UDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 457SER 756
B
 LEU 457VAL 754
C
 LEU 457SER 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8UDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
468 470Right-handed 310
Helix 2
AA2
A
515 533Right-handed alpha
Helix 3
AA3
A
562 570Right-handed alpha
Helix 4
AA4
A
590 611Right-handed alpha
Helix 5
AA5
A
619 621Right-handed 310
Helix 6
AA6
A
656 660Right-handed 310
Helix 7
AA7
A
662 669Right-handed alpha
Helix 8
AA8
A
672 689Right-handed alpha
Helix 9
AA9
A
699 710Right-handed alpha
Helix 10
AB1
A
720 731Right-handed alpha
Helix 11
AB2
A
734 738Right-handed 310
Helix 12
AB3
A
740 755Right-handed alpha
Helix 13
AB4
B
468 470Right-handed 310
Helix 14
AB5
B
515 533Right-handed alpha
Helix 15
AB6
B
562 570Right-handed alpha
Helix 16
AB7
B
590 611Right-handed alpha
Helix 17
AB8
B
619 621Right-handed 310
Helix 18
AB9
B
655 661Right-handed 310
Helix 19
AC1
B
662 669Right-handed alpha
Helix 20
AC2
B
672 689Right-handed alpha
Helix 21
AC3
B
699 710Right-handed alpha
Helix 22
AC4
B
720 731Right-handed alpha
Helix 23
AC5
B
734 738Right-handed 310
Helix 24
AC6
B
740 754Right-handed alpha
Helix 25
AC7
C
468 470Right-handed 310
Helix 26
AC8
C
515 533Right-handed alpha
Helix 27
AC9
C
562 570Right-handed alpha
Helix 28
AD1
C
590 611Right-handed alpha
Helix 29
AD2
C
619 621Right-handed 310
Helix 30
AD3
C
656 661Right-handed 310
Helix 31
AD4
C
662 669Right-handed alpha
Helix 32
AD5
C
672 689Right-handed alpha
Helix 33
AD6
C
699 709Right-handed alpha
Helix 34
AD7
C
720 731Right-handed alpha
Helix 35
AD8
C
734 738Right-handed 310
Helix 36
AD9
C
740 756Right-handed alpha
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There are 6 sheets in PDB entry 8UDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 477first strand
Strand 2
A
486 492anti-parallel
Strand 3
A
502 509anti-parallel
Strand 4
A
552 556anti-parallel
Strand 5
A
541 545anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
631 633anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 477first strand
Strand 2
B
486 492anti-parallel
Strand 3
B
502 508anti-parallel
Strand 4
B
552 556anti-parallel
Strand 5
B
541 545anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
623 625first strand
Strand 2
B
631 633anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
472 477first strand
Strand 2
C
486 492anti-parallel
Strand 3
C
502 509anti-parallel
Strand 4
C
552 556anti-parallel
Strand 5
C
541 545anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
623 625first strand
Strand 2
C
631 633anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il