Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UDU entry

There are 2 chains in PDB entry 8UDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 460HIS 759
B
 LEU 459THR 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8UDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
462 466Right-handed 310
Helix 2
AA2
A
468 470Right-handed 310
Helix 3
AA3
A
515 533Right-handed alpha
Helix 4
AA4
A
562 569Right-handed alpha
Helix 5
AA5
A
590 611Right-handed alpha
Helix 6
AA6
A
619 621Right-handed 310
Helix 7
AA7
A
657 661Right-handed 310
Helix 8
AA8
A
662 669Right-handed alpha
Helix 9
AA9
A
672 689Right-handed alpha
Helix 10
AB1
A
699 709Right-handed alpha
Helix 11
AB2
A
720 731Right-handed alpha
Helix 12
AB3
A
734 738Right-handed 310
Helix 13
AB4
A
740 758Right-handed alpha
Helix 14
AB5
B
462 466Right-handed 310
Helix 15
AB6
B
468 470Right-handed 310
Helix 16
AB7
B
515 533Right-handed alpha
Helix 17
AB8
B
562 569Right-handed alpha
Helix 18
AB9
B
590 611Right-handed alpha
Helix 19
AC1
B
619 621Right-handed 310
Helix 20
AC2
B
657 661Right-handed 310
Helix 21
AC3
B
662 669Right-handed alpha
Helix 22
AC4
B
672 689Right-handed alpha
Helix 23
AC5
B
699 709Right-handed alpha
Helix 24
AC6
B
720 731Right-handed alpha
Helix 25
AC7
B
734 738Right-handed 310
Helix 26
AC8
B
740 755Right-handed alpha
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There are 6 sheets in PDB entry 8UDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 477first strand
Strand 2
A
486 492anti-parallel
Strand 3
A
502 508anti-parallel
Strand 4
A
552 556anti-parallel
Strand 5
A
541 545anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
631 633anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 479first strand
Strand 2
B
485 491anti-parallel
Strand 3
B
504 509anti-parallel
Strand 4
B
552 556anti-parallel
Strand 5
B
541 545anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
613 614first strand
Strand 2
B
640 641anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
623 625first strand
Strand 2
B
631 633anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
648 649first strand
Strand 2
B
670 671anti-parallel
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