Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UDZ entry

There are 6 chains in PDB entry 8UDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 36	SER 390
B	ILE 36	SER 390
C	GLN 1	SER 223
D	ASN 1	PRO 214
E	GLN 1	SER 223
F	ASN 1	LEU 81

There are 32 helices in PDB entry 8UDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	57	Right-handed alpha
Helix 2	AA2	A	74	86	Right-handed alpha
Helix 3	AA3	A	137	144	Right-handed alpha
Helix 4	AA4	A	146	148	Right-handed 310
Helix 5	AA5	A	200	208	Right-handed alpha
Helix 6	AA6	A	302	307	Right-handed alpha
Helix 7	AA7	B	37	57	Right-handed alpha
Helix 8	AA8	B	74	86	Right-handed alpha
Helix 9	AA9	B	137	144	Right-handed alpha
Helix 10	AB1	B	146	148	Right-handed 310
Helix 11	AB2	B	200	208	Right-handed alpha
Helix 12	AB3	B	302	307	Right-handed alpha
Helix 13	AB4	C	28	32	Right-handed 310
Helix 14	AB5	C	87	91	Right-handed 310
Helix 15	AB6	C	102	107	Right-handed alpha
Helix 16	AB7	C	164	166	Right-handed 310
Helix 17	AB8	D	28	32	Right-handed 310
Helix 18	AB9	D	82	86	Right-handed 310
Helix 19	AC1	D	127	132	Right-handed alpha
Helix 20	AC2	D	187	194	Right-handed alpha
Helix 21	AC3	E	28	32	Right-handed 310
Helix 22	AC4	E	62	65	Right-handed 310
Helix 23	AC5	E	74	76	Right-handed 310
Helix 24	AC6	E	102	107	Right-handed alpha
Helix 25	AC7	E	164	166	Right-handed 310
Helix 26	AC8	E	195	197	Right-handed 310
Helix 27	AC9	E	209	212	Right-handed 310
Helix 28	AD1	F	28	32	Right-handed 310
Helix 29	AD2	F	69	71	Right-handed 310
Helix 30	AD3	F	82	86	Right-handed 310
Helix 31	AD4	F	127	133	Right-handed alpha
Helix 32	AD5	F	187	194	Right-handed alpha

There are 32 sheets in PDB entry 8UDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	150	157	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	106	112	anti-parallel
Strand 5	B	373	390	anti-parallel
Strand 6	B	355	370	anti-parallel
Strand 7	B	311	313	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	136	first strand
Strand 2	A	214	221	anti-parallel
Strand 3	A	166	170	anti-parallel
Strand 4	A	184	187	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	227	first strand
Strand 2	A	232	235	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	321	323	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	301	first strand
Strand 2	A	316	318	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	370	first strand
Strand 2	A	373	390	anti-parallel
Strand 3	B	106	112	anti-parallel
Strand 4	B	257	262	anti-parallel
Strand 5	B	150	159	anti-parallel
Strand 6	B	194	199	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	136	first strand
Strand 2	B	214	221	anti-parallel
Strand 3	B	166	173	anti-parallel
Strand 4	B	179	187	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	321	323	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	301	first strand
Strand 2	B	316	318	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	115	119	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	115	119	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	108	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	135	first strand
Strand 2	C	145	153	anti-parallel
Strand 3	C	184	191	anti-parallel
Strand 4	C	171	178	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	202	208	anti-parallel
Strand 3	C	217	219	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	63	68	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	107	110	parallel
Strand 3	D	87	95	anti-parallel
Strand 4	D	35	39	anti-parallel
Strand 5	D	46	49	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	107	110	parallel
Strand 3	D	87	95	anti-parallel
Strand 4	D	100	103	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	136	145	anti-parallel
Strand 3	D	178	186	anti-parallel
Strand 4	D	165	167	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	136	145	anti-parallel
Strand 3	D	178	186	anti-parallel
Strand 4	D	171	172	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	151	156	anti-parallel
Strand 3	D	197	203	anti-parallel
Strand 4	D	206	212	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	78	82	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	55	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	108	111	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	138	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	138	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	177	178	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	203	208	anti-parallel
Strand 3	E	213	218	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	63	68	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	87	94	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	46	49	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	87	94	anti-parallel
Strand 4	F	101	103	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	136	145	anti-parallel
Strand 3	F	178	186	anti-parallel
Strand 4	F	165	167	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	136	145	anti-parallel
Strand 3	F	178	186	anti-parallel
Strand 4	F	171	172	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	161	first strand
Strand 2	F	151	156	anti-parallel
Strand 3	F	197	203	anti-parallel
Strand 4	F	206	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UDZ